View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15894_high_24 (Length: 227)
Name: NF15894_high_24
Description: NF15894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15894_high_24 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 46768679 - 46768916
Alignment:
| Q |
1 |
agattgatagacaccaaaagcccatctcttgagagagagatagagtgagtgatctaaaagatgtgatatgttgttggtgtaatagga----------aaa |
90 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
46768679 |
agattgatagacaccaaaagcccatctcttgagagagagatagagtgagtgatctaaaagatgtgatatgttgttggtgtaataggaagatatatatata |
46768778 |
T |
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| Q |
91 |
tatatagagaaaataaggtgttaaataaatgtaggaaatttaagagtgtttaaatataaaagttgtaaaattacc-tccnnnnnnnggaaatgactcagt |
189 |
Q |
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|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
46768779 |
tatatatataaaataaggtgttaaataaatgtaggaaatttaagagtgtttaaatataaaagttgtaaaattaccttcccttttttggaaatgactcagt |
46768878 |
T |
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| Q |
190 |
ttactgaagtcaaataatttactaccatgtgcgggtca |
227 |
Q |
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||||||||| ||||||||||||||||||||||| |||| |
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| T |
46768879 |
ttactgaagccaaataatttactaccatgtgcgagtca |
46768916 |
T |
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