View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15894_high_3 (Length: 614)
Name: NF15894_high_3
Description: NF15894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15894_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 363
Target Start/End: Original strand, 30761839 - 30762184
Alignment:
| Q |
18 |
ggaaagatcttgtgttagttctccagccacataccttctatcttttggtaactcaagtattgaaccaatcattgaaccaatgtcacataaaactaaaaga |
117 |
Q |
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| T |
30761839 |
ggaaagatcttgtgttagttctccagccacataccttctatcttttggtaactcaagtattgaaccaatcattgaaccaatgtcacataaaactaaaaga |
30761938 |
T |
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| Q |
118 |
aggacagatgaatcaaggggggtgaaggaagcaacaaagaaggttagaagatcatgtgagacagtacaagatcatttgatggctgagaggaaaaggagaa |
217 |
Q |
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| T |
30761939 |
aggacagatgaatcaaggggggtgaaggaagcaacaaagaaggttagaagatcatgtgagacagtacaagatcatttgatggctgagaggaaaaggagaa |
30762038 |
T |
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| Q |
218 |
gggaattaactgagaatatcatagcactttcagccatgatacctggcttgaaaaaggttagtttctttctatgatttcattattgatctaaagttaattt |
317 |
Q |
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| T |
30762039 |
gggaattaactgagaatatcatagcactttcagccatgatacctggcttgaaaaaggttagtttctttctatgatttcattattgatctaaagttaattt |
30762138 |
T |
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| Q |
318 |
aaaagtatacaatcatatgattgttaaatgaaccattatcctacaa |
363 |
Q |
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| T |
30762139 |
aaaagtatacaatcatatgattgttaaatgaaccattatcctacaa |
30762184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 459 - 594
Target Start/End: Original strand, 30762281 - 30762416
Alignment:
| Q |
459 |
gacactaaagtctaaaactactttacaaaattatgggatttgaactctgtctcacgaatattactaataacataagccaaaacaacttttatatgctcaa |
558 |
Q |
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| T |
30762281 |
gacactaaagtctaaaactactttacaaaattatgggatttgaactctgtctcacgaatattactaataacataagccaaaacaacttttatatgctcaa |
30762380 |
T |
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| Q |
559 |
aatgcaatagataagtttaaattagttagattcctc |
594 |
Q |
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| T |
30762381 |
aatgcaatagataagttcaaattagttagattcctc |
30762416 |
T |
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