View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15894_high_7 (Length: 408)
Name: NF15894_high_7
Description: NF15894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15894_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 12 - 390
Target Start/End: Complemental strand, 33297877 - 33297494
Alignment:
| Q |
12 |
tactgaaggacacaaatattattgaattggtagacttagaactgttctgagattcaccagttgtgaaagaaatcatcttcaaggattttaacaaatagag |
111 |
Q |
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| T |
33297877 |
tactgaaggacacaaatattattgaattggtagacttataactgttctgagattcaccagttgtgaaagaaatcatcttcaaggattttaacacatagag |
33297778 |
T |
|
| Q |
112 |
aataacaaatgcacacaccatctgaa-ccaaatatgacatacattagtacataacctat----taacttatcagcatgtgaaaaacatggtaaaaaatat |
206 |
Q |
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| T |
33297777 |
aataacaaatgcacacaccatctgaaaccaaatatgacatatattagtacataacctatcagttaacttatcagcatgtgaaaaacatggtaaaaaatat |
33297678 |
T |
|
| Q |
207 |
ttacctctgtccctatttataattgtctctttgatacttttcaagtttcacatatatattaacataagttgacatcctaaataatgtttaccaataaatg |
306 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33297677 |
ttacctctgtccctatttataattgtgtctttgatacttttcaagtctcacatatatattaacataagttgacatcctaaataatgtttacctataaatg |
33297578 |
T |
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| Q |
307 |
ttactaaagtgtctaatgtgtataaatgttactaaaggatagtcacaaagaatcttgaaaaatgaatttacctgagtaagtgtg |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33297577 |
ttactaaagtgtctaatgtgtataaatgttactaaaggatagtcacaaagaatcttgaaaaatgaatttacctgagtaagtgtg |
33297494 |
T |
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