View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15894_high_9 (Length: 349)
Name: NF15894_high_9
Description: NF15894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15894_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 3 - 194
Target Start/End: Original strand, 46768922 - 46769113
Alignment:
| Q |
3 |
ccacgacttcactcacccaaccatattatgtccgtttgattggccatctaaaactcaaactagattttaatttctttttaaatttaaaatacgatttaaa |
102 |
Q |
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| T |
46768922 |
ccacgacttcactcacccaaccatattatgtccgtttgattggccatctgaaactcaatctagattttaatttctttttaaatttaaaatacgatttaaa |
46769021 |
T |
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| Q |
103 |
atttgggtcgtgtttggtcttgattgagcaaccaatataatcttatcgtgttcggtaattgaaccctaatccaaaatttacaccctcaaata |
194 |
Q |
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| T |
46769022 |
atttgggtcgtgtttggtcttgattgagcaaccaatataatcttatcgtgttcaataattgaaccttaatccaaaatttacaccctcaaata |
46769113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 260 - 333
Target Start/End: Original strand, 46769179 - 46769252
Alignment:
| Q |
260 |
attgacccgtaacaccacaattgatgacaaaattcttcctcaagagatctaacattgttacatgcctaggttag |
333 |
Q |
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| T |
46769179 |
attgaccgataacaccacaattgataacaaagttcttcctcaagagatctaacattgttacatgcctaggttag |
46769252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 322
Target Start/End: Complemental strand, 38127012 - 38126973
Alignment:
| Q |
283 |
atgacaaaattcttcctcaagagatctaacattgttacat |
322 |
Q |
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| T |
38127012 |
atgacaaaattcttcctcaaaagatttaacattgttacat |
38126973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 319
Target Start/End: Complemental strand, 38230980 - 38230939
Alignment:
| Q |
278 |
aattgatgacaaaattcttcctcaagagatctaacattgtta |
319 |
Q |
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| T |
38230980 |
aattgatggcaaaattctttctcaagagatttaacattgtta |
38230939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 108
Target Start/End: Complemental strand, 51988503 - 51988467
Alignment:
| Q |
73 |
tttctttttaaatttaaaatacga-tttaaaatttgg |
108 |
Q |
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| T |
51988503 |
tttctttttaaatttaaaatacgagtttaaaatttgg |
51988467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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