View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15894_low_1 (Length: 974)
Name: NF15894_low_1
Description: NF15894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15894_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 642; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 209 - 956
Target Start/End: Original strand, 7108239 - 7108998
Alignment:
| Q |
209 |
taagaaatatgacaagattatactcacttttaaaactactcgataaagaggagaaaatatgataagaaatacatctatcgttttttaaaactctagacct |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7108239 |
taagaaatatgacaagattatactcacttttaaaactactcgataaagaggagaaaatatgataagaaatacatctatcattttttaaaactctagacct |
7108338 |
T |
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| Q |
309 |
taacatctttgcccgatccgtatcagaagacgccattctctcaacaaagcttaagattataagcttcattaagatggattagatatctaatacctaaccc |
408 |
Q |
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| T |
7108339 |
taacatctttgcccaatccgtatcagaagacgccattctcccaacaaagcttaagattataagcttcattaagatggattagatatctaatacctaaccc |
7108438 |
T |
|
| Q |
409 |
tccctcctctaatggcttacaaattttttccatgccacaatgactaatttcctcttctcaatgtccccactccaaatgaagttcctaatgcttctctcca |
508 |
Q |
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| T |
7108439 |
tccttcctctaatggcttacaaatttttttcatgccacaatgactaatttcctcttctcaatgtccccactccaaatgaagttcctaatgcttctctcca |
7108538 |
T |
|
| Q |
509 |
aatcttttaacaatgaaaatggcaaaccatataagaacaaattgtgtatcagtattccttgaatcaatgagattac----------------tatggttt |
592 |
Q |
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|||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7108539 |
aatcttttaacaatgaaaatagcaaagcatataaggacaaattgtgtatcagtattccttgaatcaatgagattactatggttttctggacatatggttt |
7108638 |
T |
|
| Q |
593 |
tctggaccccttgataaggtctagcttaccttcatccaccaatctagaaatacttctgctcatcacctctttggcaaaacataaaaggagaggagagata |
692 |
Q |
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| T |
7108639 |
tctggaccccttgataaggtctagcttaccttcatccaccaatctagaaatacctctgctcatcacctctttggcaaaacataaaaggagaggag----a |
7108734 |
T |
|
| Q |
693 |
gatacagtattcctgcctcacccctctcttacaatgaaaataatcatgaagcttatcattgagagaaattatcagagaatatgagtttaaaatgacctct |
792 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
7108735 |
gatacagtattcctgcctcacccctctcttacaatgaaaataatcatgaagcttatcattgagagaaattatcagacaatatgagtttaaaatgacctct |
7108834 |
T |
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| Q |
793 |
atccaattacaaatgttttcattaaaaccaaaagctttcaaaatcttcaaaagaaattttcattccacagtgtcaaaagctttataaatgtctattttaa |
892 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7108835 |
atccaattccaaatgttttcattaaaaccaaaagctttcaaaatcttcaaaagaaattttcattccacagtgtcaaaagctttataaatgtctattttaa |
7108934 |
T |
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| Q |
893 |
gggcaagattacctccaaaagatctattatggagaagatcggttgcctctcaagtgaggttgat |
956 |
Q |
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| T |
7108935 |
gggcaagattacctccaaaagatctattatggcgaagatcgggtgcctctcaagtgaggttgat |
7108998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 7107869 - 7108062
Alignment:
| Q |
17 |
actatgaagttcatgttactggttaagcctaagcagctgttccacctgtttatgattctccaaggaaccagagaaatggacttgaaggcaagaaggataa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7107869 |
actatgaagttcatgttactggttaagcctaagcagttgttccacctgtttatgattctccaaggaaccagagaaatggacttgaaggcaaaaaggataa |
7107968 |
T |
|
| Q |
117 |
gcatagaatctgtctccgaccaaaaatttgataaa-ctctgctacgagcaatttcaatggtcatcatagcacctgataattcaacaaatatgat |
209 |
Q |
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| T |
7107969 |
gcatagaatctgtctccgaccaaaaatttgacaaacctctgctatgaccaatttcaatggtcatcatagcacctgataattcaacaaatatgat |
7108062 |
T |
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