View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15894_low_11 (Length: 348)

Name: NF15894_low_11
Description: NF15894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15894_low_11
NF15894_low_11
[»] chr2 (5 HSPs)
chr2 (9-163)||(16132200-16132354)
chr2 (228-332)||(16132419-16132521)
chr2 (17-163)||(40446343-40446492)
chr2 (14-55)||(14489919-14489960)
chr2 (228-278)||(19710394-19710444)
[»] chr1 (8 HSPs)
chr1 (15-161)||(37668424-37668572)
chr1 (17-163)||(21265848-21265997)
chr1 (17-163)||(336967-337115)
chr1 (20-146)||(9538279-9538408)
chr1 (85-163)||(36075345-36075423)
chr1 (91-163)||(29387799-29387871)
chr1 (234-278)||(24274822-24274866)
chr1 (237-278)||(37668650-37668690)
[»] chr8 (5 HSPs)
chr8 (9-160)||(21232858-21233013)
chr8 (55-163)||(22817311-22817417)
chr8 (237-276)||(21233090-21233129)
chr8 (61-159)||(42078429-42078528)
chr8 (111-159)||(41162285-41162333)
[»] chr7 (5 HSPs)
chr7 (17-163)||(10290297-10290445)
chr7 (55-163)||(48655512-48655618)
chr7 (61-126)||(9741624-9741690)
chr7 (56-163)||(15874975-15875083)
chr7 (123-160)||(12197427-12197464)
[»] scaffold0413 (1 HSPs)
scaffold0413 (17-163)||(7700-7849)
[»] chr4 (5 HSPs)
chr4 (20-163)||(49496969-49497115)
chr4 (237-278)||(49496855-49496896)
chr4 (69-159)||(10345639-10345730)
chr4 (237-278)||(42343380-42343421)
chr4 (235-267)||(41947481-41947513)
[»] chr6 (5 HSPs)
chr6 (17-89)||(10752682-10752758)
chr6 (234-278)||(16110262-16110306)
chr6 (237-278)||(25003817-25003858)
chr6 (237-278)||(34635181-34635222)
chr6 (111-163)||(34635299-34635351)
[»] chr5 (3 HSPs)
chr5 (228-278)||(42859575-42859625)
chr5 (85-163)||(40686348-40686426)
chr5 (56-163)||(535843-535951)
[»] chr3 (7 HSPs)
chr3 (74-163)||(11969074-11969164)
chr3 (9-163)||(46405479-46405640)
chr3 (61-163)||(52642451-52642555)
chr3 (228-278)||(35410001-35410050)
chr3 (237-278)||(16473951-16473992)
chr3 (234-272)||(15997513-15997551)
chr3 (237-278)||(19545769-19545810)
[»] scaffold0618 (1 HSPs)
scaffold0618 (9-163)||(5149-5311)
[»] scaffold0807 (1 HSPs)
scaffold0807 (236-278)||(1207-1249)
[»] scaffold0657 (1 HSPs)
scaffold0657 (237-278)||(5551-5592)


Alignment Details
Target: chr2 (Bit Score: 135; Significance: 3e-70; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 9 - 163
Target Start/End: Original strand, 16132200 - 16132354
Alignment:
Q  9 agcagagaattttattagaataaatataaataatttaagaaataattcctacttttgacacaccaaattgattaataaaaagaactatatgaaagaaaac 108  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  16132200 agcaaagaattttattagaataaatataaataatttaagaattaattcctacttttaccacaccaaattgattaataaaaagaactatatgaaagaaaac 16132299  T
Q  109 ctaattaatgaaccaaagtaaggaataccaagattttgcgaagtttctcgcacat 163  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  16132300 ctaattaatgaaccaaagtaaggaatagcaagattttgcgaagtttctcgcacat 16132354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 228 - 332
Target Start/End: Original strand, 16132419 - 16132521
Alignment:
Q  228 tattgaggcgttacattattacccccttaaaatagtttcgtcctcaaaactnnnnnnngttacaaaatattggggttgatctcccttatttacataaaat 327  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||| |||       ||||||||||||||||||||||||||||||||||||||||||    
T  16132419 tattggggcgttacattattaccctcttaaaatagtttcgtcctcaatactagaaa--gttacaaaatattggggttgatctcccttatttacataaaat 16132516  T
Q  328 catag 332  Q
    |||||    
T  16132517 catag 16132521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 163
Target Start/End: Complemental strand, 40446492 - 40446343
Alignment:
Q  17 attttattagaataaatataaataatttaagaaataat--tcctacttttgacacaccaaattgattaataaaaa-gaactatatgaaagaaaacctaat 113  Q
    ||||||||||||||||||||||||||||||||||||||  ||||| ||||  ||||||||||||||||||||||| ||| || ||||||  | |   |||    
T  40446492 attttattagaataaatataaataatttaagaaataattatcctatttttttcacaccaaattgattaataaaaatgaaatagatgaaatcagattcaat 40446393  T
Q  114 taatgaaccaaagtaaggaataccaagattttgcgaagtttctcgcacat 163  Q
    |||| ||||||||||| ||||  ||||||||||  |||||||||||||||    
T  40446392 taataaaccaaagtaaagaatgtcaagattttgtaaagtttctcgcacat 40446343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 14489960 - 14489919
Alignment:
Q  14 agaattttattagaataaatataaataatttaagaaataatt 55  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  14489960 agaattttattagaataaatataaataatttaagaaataatt 14489919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 19710394 - 19710444
Alignment:
Q  228 tattgaggcgttacattattacccccttaaaatagtttcgtcctcaaaact 278  Q
    ||||| || |||||||||||||||||||||||||||||||||||| |||||    
T  19710394 tattggggtgttacattattacccccttaaaatagtttcgtcctcgaaact 19710444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 9e-58; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 15 - 161
Target Start/End: Original strand, 37668424 - 37668572
Alignment:
Q  15 gaattttattagaataaatataaataatttaagaaataatt--cctacttttgacacaccaaattgattaataaaaagaactatatgaaagaaaacctaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||  |||| ||||||||||||||||||||||||||||| |||||||||||    
T  37668424 gaattttattagaataaatataaataatttaagaaataattatcctactttttccacaacaaattgattaataaaaagaactatatgatagaaaacctaa 37668523  T
Q  113 ttaatgaaccaaagtaaggaataccaagattttgcgaagtttctcgcac 161  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  37668524 ttaataaaccaaagtaaggaataccaagattttgtgaagtttctcgcac 37668572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 17 - 163
Target Start/End: Original strand, 21265848 - 21265997
Alignment:
Q  17 attttattagaataaatataaataatttaagaaataatt--cctacttttgacacaccaaattgattaataaaaa-gaactatatgaaagaaaacctaat 113  Q
    |||||||||||||||||||||||||||||||||||||||  |||| ||||| ||||||||||||||||||||||| ||| || ||||||  |||   |||    
T  21265848 attttattagaataaatataaataatttaagaaataattatcctatttttgtcacaccaaattgattaataaaaatgaaatagatgaaatcaaattcaat 21265947  T
Q  114 taatgaaccaaagtaaggaataccaagattttgcgaagtttctcgcacat 163  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21265948 taataaaccaaagtaaggaataccaagattttgcgaagtttctcgcacat 21265997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 17 - 163
Target Start/End: Complemental strand, 337115 - 336967
Alignment:
Q  17 attttattagaataaatataaataatttaagaaataat--tcctacttttgacacaccaaattgattaataaaaa-gaactatatgaaagaaaacctaat 113  Q
    ||||||||||||||||||||||||||||||||||||||  ||||| ||||  ||||||||||||||||||||||| ||| || ||||||  | |   |||    
T  337115 attttattagaataaatataaataatttaagaaataattatccta-ttttttcacaccaaattgattaataaaaatgaaatagatgaaatcagattcaat 337017  T
Q  114 taatgaaccaaagtaaggaataccaagattttgcgaagtttctcgcacat 163  Q
    |||| ||||||||||| ||||  ||||||||||  |||||||||||||||    
T  337016 taataaaccaaagtaaagaatgtcaagattttgtaaagtttctcgcacat 336967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 9538279 - 9538408
Alignment:
Q  20 ttattagaataaatataaataatttaagaaataatt--cctacttttgacacaccaaattgattaataaaaa-gaactatatgaaagaaaacctaattaa 116  Q
    ||||| ||||||| |||||| || |||| ||| |||  |||| ||||| |||||||||||||||| |||||| |||||||||||||||||| ||||||||    
T  9538279 ttatttgaataaaaataaatcatgtaaggaatgattatcctatttttgtcacaccaaattgattattaaaaatgaactatatgaaagaaaatctaattaa 9538378  T
Q  117 tgaaccaaa-gtaaggaataccaagattttg 146  Q
    | ||||||| |||||||||  ||||||||||    
T  9538379 t-aaccaaacgtaaggaatgtcaagattttg 9538408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 85 - 163
Target Start/End: Complemental strand, 36075423 - 36075345
Alignment:
Q  85 aaaaagaactatatgaaagaaaacctaattaatgaaccaaagtaaggaataccaagattttgcgaagtttctcgcacat 163  Q
    |||| ||||||||| |||||||| ||||||||| |||||||||||||||| ||||||| ||| ||| ||||||||||||    
T  36075423 aaaatgaactatataaaagaaaatctaattaataaaccaaagtaaggaatgccaagatgttgtgaaatttctcgcacat 36075345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 163
Target Start/End: Complemental strand, 29387871 - 29387799
Alignment:
Q  91 aactatatgaaagaaaacctaattaatgaaccaaagtaaggaataccaagattttgcgaagtttctcgcacat 163  Q
    ||||||||||||||||||||||||||| | | |||||||||||| |||||||||||  || ||||||||||||    
T  29387871 aactatatgaaagaaaacctaattaataaccaaaagtaaggaatgccaagattttgtaaaatttctcgcacat 29387799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 24274866 - 24274822
Alignment:
Q  234 ggcgttacattattacccccttaaaatagtttcgtcctcaaaact 278  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  24274866 ggcgttacattattacccccttaaaatagtttcgtcctcgaaact 24274822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 278
Target Start/End: Original strand, 37668650 - 37668690
Alignment:
Q  237 gttacattattacccccttaaaatagtttcgtcctcaaaact 278  Q
    |||||||||||||||| ||||||||||||||||||| |||||    
T  37668650 gttacattattacccc-ttaaaatagtttcgtcctcgaaact 37668690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 9 - 160
Target Start/End: Original strand, 21232858 - 21233013
Alignment:
Q  9 agcagagaattttattagaataaa-tataaataatttaagaaataatt--cctacttttgacacaccaaattgattaataaaaa-gaactatatgaaaga 104  Q
    |||| ||||||||||||||||||| |||||||||| ||||||||||||  |||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  21232858 agcaaagaattttattagaataaaatataaataatctaagaaataattatcctacttttgccacaccaaattgattaataaaaatgaactatatgaaaga 21232957  T
Q  105 aaacctaattaatgaaccaaagtaaggaataccaagattttgcgaagtttctcgca 160  Q
    |||||||||||||||||||||||||||||||| |||||||||  ||||||||||||    
T  21232958 aaacctaattaatgaaccaaagtaaggaatactaagattttggaaagtttctcgca 21233013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 163
Target Start/End: Original strand, 22817311 - 22817417
Alignment:
Q  55 tcctacttttgacacaccaaattgattaataaaaa-gaactatatgaaagaaaacctaattaatgaaccaaagtaaggaataccaagattttgcgaagtt 153  Q
    ||||| ||||| |||||  |||||||||||| ||| | ||||||||| |||||| ||||||||  ||||| ||||||||||||||||||||   ||| ||    
T  22817311 tcctatttttggcacacagaattgattaatataaatgcactatatgagagaaaatctaattaacaaaccagagtaaggaataccaagattt---gaaatt 22817407  T
Q  154 tctcgcacat 163  Q
    ||||||||||    
T  22817408 tctcgcacat 22817417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 276
Target Start/End: Original strand, 21233090 - 21233129
Alignment:
Q  237 gttacattattacccccttaaaatagtttcgtcctcaaaa 276  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  21233090 gttacattattacccacttaaaatagtttcgtcctcaaaa 21233129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 159
Target Start/End: Original strand, 42078429 - 42078528
Alignment:
Q  61 ttttgacacaccaaattgattaataaaaa-gaactatatgaaagaaaacctaattaatgaaccaaagtaaggaataccaagattttgcgaagtttctcgc 159  Q
    ||||| || |||||||||||||||||||| ||| || ||| ||  |||   ||||||| |||||||||||||||| ||||||| ||| ||||||||||||    
T  42078429 ttttgtcataccaaattgattaataaaaatgaaatagatggaatcaaattcaattaataaaccaaagtaaggaatgccaagatgttgtgaagtttctcgc 42078528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 41162333 - 41162285
Alignment:
Q  111 aattaatgaaccaaagtaaggaataccaagattttgcgaagtttctcgc 159  Q
    ||||||| |||||||||||||||| | ||||| ||||||||||||||||    
T  41162333 aattaataaaccaaagtaaggaatgctaagatgttgcgaagtttctcgc 41162285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 17 - 163
Target Start/End: Original strand, 10290297 - 10290445
Alignment:
Q  17 attttattagaataaatataaataatttaagaaataat--tcctacttttgacacaccaaattgattaataaaaa-gaactatatgaaagaaaacctaat 113  Q
    ||||||||||||||||||||||||||||||||||||||  ||||| ||||| ||||||||||||||||||||||| ||| || ||||||  | |   |||    
T  10290297 attttattagaataaatataaataatttaagaaataattatcctatttttgtcacaccaaattgattaataaaaatgaaatagatgaaatcagattcaat 10290396  T
Q  114 taatgaaccaaagtaaggaataccaagattttgcgaagtttctcgcacat 163  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10290397 taat-aaccaaagtaaggaataccaagattttgcgaagtttctcgcacat 10290445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 55 - 163
Target Start/End: Original strand, 48655512 - 48655618
Alignment:
Q  55 tcctacttttgacacaccaaattgattaataaaaa-gaactatatgaaagaaaacctaattaatgaaccaaagtaaggaataccaagattttgcgaagtt 153  Q
    ||||| ||||| |||||  |||||||||||||||| | |||||||||||||||| ||||||||| ||||||||||||||||||||||||||   ||| ||    
T  48655512 tcctatttttggcacacataattgattaataaaaatgcactatatgaaagaaaatctaattaataaaccaaagtaaggaataccaagattt---gaaatt 48655608  T
Q  154 tctcgcacat 163  Q
    ||||||||||    
T  48655609 tctcgcacat 48655618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 9741690 - 9741624
Alignment:
Q  61 ttttgacacaccaaattgattaataaaaa-gaactatatgaaagaaaacctaattaatgaaccaaag 126  Q
    ||||| ||||||||| ||||||||||||| ||||||||| |||||||||||||||||| ||||||||    
T  9741690 ttttgtcacaccaaactgattaataaaaatgaactatataaaagaaaacctaattaataaaccaaag 9741624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 163
Target Start/End: Original strand, 15874975 - 15875083
Alignment:
Q  56 cctacttttgacacaccaaattgattaataaaaa-gaactatatgaaagaaaacctaattaatgaaccaaagtaaggaataccaagattttgcgaagttt 154  Q
    |||| ||||| || |||||||||||||||||||| ||| || ||||||  | |   ||||||| ||||||||||| ||||  ||||||||||  ||||||    
T  15874975 cctatttttgtcataccaaattgattaataaaaatgaaatagatgaaatcagattcaattaataaaccaaagtaaagaatgtcaagattttgtaaagttt 15875074  T
Q  155 ctcgcacat 163  Q
    |||||||||    
T  15875075 ctcgcacat 15875083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 12197427 - 12197464
Alignment:
Q  123 aaagtaaggaataccaagattttgcgaagtttctcgca 160  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  12197427 aaagtaaggaatgccaagattttgtgaagtttctcgca 12197464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 17 - 163
Target Start/End: Complemental strand, 7849 - 7700
Alignment:
Q  17 attttattagaataaatataaataatttaagaaataat--tcctacttttgacacaccaaattgattaataaaaa-gaactatatgaaagaaaacctaat 113  Q
    ||||||||||||||||||||||||||||||||||||||  ||||| ||||| ||||||||||||||||||||||| ||| || ||||||  | |   |||    
T  7849 attttattagaataaatataaataatttaagaaataattatcctatttttgtcacaccaaattgattaataaaaatgaaatagatgaaatcagattcaat 7750  T
Q  114 taatgaaccaaagtaaggaataccaagattttgcgaagtttctcgcacat 163  Q
    |||| ||| ||||||| |||||||||||||||||||||||||||||||||    
T  7749 taataaactaaagtaaagaataccaagattttgcgaagtttctcgcacat 7700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 20 - 163
Target Start/End: Complemental strand, 49497115 - 49496969
Alignment:
Q  20 ttattagaataaatataaataatttaagaaataatt--cctacttttgacacaccaaattgattaataaaaa-gaactatatgaaagaaaacctaattaa 116  Q
    ||||| |||| || |||||| ||||||| ||| |||  |||| ||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  49497115 ttatttgaatgaaaataaatcatttaaggaatgattatcctatttttgtcacaccaaattgattattaaaaatgaactatatgaaagaaaacctaattaa 49497016  T
Q  117 tgaaccaaagtaaggaataccaagattttgcgaagtttctcgcacat 163  Q
    | | | |||||||||||| |||||||||||  || ||||||||||||    
T  49497015 taaccaaaagtaaggaatgccaagattttgtaaaatttctcgcacat 49496969  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 49496896 - 49496855
Alignment:
Q  237 gttacattattacccccttaaaatagtttcgtcctcaaaact 278  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  49496896 gttacattattacccccttaaaatagtttcgtcctcgaaact 49496855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 159
Target Start/End: Original strand, 10345639 - 10345730
Alignment:
Q  69 caccaaattgattaataaaaa-gaactatatgaaagaaaacctaattaatgaaccaaagtaaggaataccaagattttgcgaagtttctcgc 159  Q
    ||||||||||||||||||||| ||| || ||| ||  |||   ||||||| ||||||| |||||||| ||||||| ||| ||||||||||||    
T  10345639 caccaaattgattaataaaaatgaaatagatggaatcaaattcaattaataaaccaaaataaggaatgccaagatgttgtgaagtttctcgc 10345730  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 42343421 - 42343380
Alignment:
Q  237 gttacattattacccccttaaaatagtttcgtcctcaaaact 278  Q
    ||||||||||||||| |||||||||||||| || ||||||||    
T  42343421 gttacattattaccctcttaaaatagtttcatcttcaaaact 42343380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 41947481 - 41947513
Alignment:
Q  235 gcgttacattattacccccttaaaatagtttcg 267  Q
    ||||||||||||||| |||||||||||||||||    
T  41947481 gcgttacattattactcccttaaaatagtttcg 41947513  T

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Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 10752682 - 10752758
Alignment:
Q  17 attttattagaataaatataaataatttaagaaataat--tccta--cttttgacacaccaaattgattaataaaaa 89  Q
    ||||||||||||||||||||||||||||||||||||||  |||||   ||||| |||||||||||||||||||||||    
T  10752682 attttattagaataaatataaataatttaagaaataattatcctatttttttgtcacaccaaattgattaataaaaa 10752758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 16110262 - 16110306
Alignment:
Q  234 ggcgttacattattacccccttaaaatagtttcgtcctcaaaact 278  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||    
T  16110262 ggcgttacattattatccccttaaaatagtttcgtcctctaaact 16110306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 25003858 - 25003817
Alignment:
Q  237 gttacattattacccccttaaaatagtttcgtcctcaaaact 278  Q
    |||||||| ||||||||||||||||||||||||||| |||||    
T  25003858 gttacattcttacccccttaaaatagtttcgtcctcgaaact 25003817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 34635222 - 34635181
Alignment:
Q  237 gttacattattacccccttaaaatagtttcgtcctcaaaact 278  Q
    |||||||| ||||||||||||||||||||||||||| |||||    
T  34635222 gttacattcttacccccttaaaatagtttcgtcctcgaaact 34635181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 34635351 - 34635299
Alignment:
Q  111 aattaatgaaccaaagtaaggaataccaagattttgcgaagtttctcgcacat 163  Q
    ||||||| ||||||||||| ||||  ||||||||||  |||||||||||||||    
T  34635351 aattaataaaccaaagtaaagaatgtcaagattttgtaaagtttctcgcacat 34635299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 42859625 - 42859575
Alignment:
Q  228 tattgaggcgttacattattacccccttaaaatagtttcgtcctcaaaact 278  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  42859625 tattggggcgttacattattacccccttaaaatagtttcgtcctcaaaact 42859575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 163
Target Start/End: Complemental strand, 40686426 - 40686348
Alignment:
Q  85 aaaaagaactatatgaaagaaaacctaattaatgaaccaaagtaaggaataccaagattttgcgaagtttctcgcacat 163  Q
    |||| ||||||||| |||||||| ||||||||| ||| ||| |||||||| ||||||| ||| ||| ||||||||||||    
T  40686426 aaaatgaactatataaaagaaaatctaattaataaactaaattaaggaatgccaagatgttgtgaaatttctcgcacat 40686348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 163
Target Start/End: Complemental strand, 535951 - 535843
Alignment:
Q  56 cctacttttgacacaccaaattgattaataaaaa-gaactatatgaaagaaaacctaattaatgaaccaaagtaaggaataccaagattttgcgaagttt 154  Q
    |||| ||||| || |||||||||||||||||||| ||| || ||||||  | |   ||||||| ||||||||||| ||||  ||||||||||  ||||||    
T  535951 cctatttttgtcataccaaattgattaataaaaatgaaatagatgaaatcagattcaattaataaaccaaagtaaagaatgtcaagattttgtaaagttt 535852  T
Q  155 ctcgcacat 163  Q
    |||||||||    
T  535851 ctcgcacat 535843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 74 - 163
Target Start/End: Original strand, 11969074 - 11969164
Alignment:
Q  74 aattgattaataaaa-agaactatatgaaagaaaacctaattaatgaaccaaagtaaggaataccaagattttgcgaagtttctcgcacat 163  Q
    ||||||||||||||| |||||||| | |||||||| ||||||||| |||||||||||| |||| ||| |||||| ||| ||||||||||||    
T  11969074 aattgattaataaaaaagaactatgtaaaagaaaatctaattaataaaccaaagtaagaaatatcaaaattttgtgaaatttctcgcacat 11969164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 163
Target Start/End: Original strand, 46405479 - 46405640
Alignment:
Q  9 agcagagaattttattagaataaatataaataatttaagaaataat--tcctac----ttttgacacaccaaattgattaataaaaa-gaactatatgaa 101  Q
    |||| |||||||||||| |||||||||||||||| |||||||||||  ||||||    ||||  || |||||||||||||||||||| ||| || |||||    
T  46405479 agcaaagaattttattaaaataaatataaataatctaagaaataattatcctacttttttttttcataccaaattgattaataaaaatgaaatagatgaa 46405578  T
Q  102 agaaaacctaattaatgaaccaaagtaaggaataccaagattttgcgaagtttctcgcacat 163  Q
    |  | |   ||||||| ||||||||||| ||||  ||||||||||  |||||||||||||||    
T  46405579 atcagattcaattaataaaccaaagtaaagaatgtcaagattttgtaaagtttctcgcacat 46405640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 163
Target Start/End: Original strand, 52642451 - 52642555
Alignment:
Q  61 ttttgacacaccaaattgattaataaaaa-gaactatatgaaagaaaacctaattaatgaaccaaagtaaggaataccaagattttgcgaagt-ttctcg 158  Q
    ||||| ||||||||||||||||||||||| |||||||| |||| |||| | ||||||| ||||| | |||||||| ||||||||||| ||| | ||||||    
T  52642451 ttttgtcacaccaaattgattaataaaaatgaactataagaaacaaaatcaaattaataaaccatattaaggaatgccaagattttgtgaaatcttctcg 52642550  T
Q  159 cacat 163  Q
    |||||    
T  52642551 cacat 52642555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 35410050 - 35410001
Alignment:
Q  228 tattgaggcgttacattattacccccttaaaatagtttcgtcctcaaaact 278  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||| |||||    
T  35410050 tattggggcgttacattattacccc-ttaaaatagtttcgtcctcgaaact 35410001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 16473992 - 16473951
Alignment:
Q  237 gttacattattacccccttaaaatagtttcgtcctcaaaact 278  Q
    |||||||| ||||||||||||||||||||||||||| |||||    
T  16473992 gttacattcttacccccttaaaatagtttcgtcctcgaaact 16473951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 272
Target Start/End: Original strand, 15997513 - 15997551
Alignment:
Q  234 ggcgttacattattacccccttaaaatagtttcgtcctc 272  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  15997513 ggcgttacattattcccctcttaaaatagtttcgtcctc 15997551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 278
Target Start/End: Original strand, 19545769 - 19545810
Alignment:
Q  237 gttacattattacccccttaaaatagtttcgtcctcaaaact 278  Q
    |||||||||||| ||| ||||||||||||||||||| |||||    
T  19545769 gttacattattatccctttaaaatagtttcgtcctcgaaact 19545810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 163
Target Start/End: Complemental strand, 5311 - 5149
Alignment:
Q  9 agcagagaattttattagaataaatataaataatttaagaaataat--tcctac-----ttttgacacaccaaattgattaataaaaa-gaactatatga 100  Q
    |||| |||||||||||| |||||||||||||||| |||||||||||  ||||||     ||||   | |||||||||||||||||||| ||| || ||||    
T  5311 agcaaagaattttattaaaataaatataaataatctaagaaataattatcctacttttttttttctataccaaattgattaataaaaatgaaatagatga 5212  T
Q  101 aagaaaacctaattaatgaaccaaagtaaggaataccaagattttgcgaagtttctcgcacat 163  Q
    ||  | |   ||||||| ||||||||||| ||||  ||||||||||  |||||||||||||||    
T  5211 aatcagattcaattaataaaccaaagtaaagaatgtcaagattttgtaaagtttctcgcacat 5149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 278
Target Start/End: Original strand, 1207 - 1249
Alignment:
Q  236 cgttacattattacccccttaaaatagtttcgtcctcaaaact 278  Q
    |||||||||||||||||||||||| |||||||||||| |||||    
T  1207 cgttacattattacccccttaaaacagtttcgtcctcgaaact 1249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 278
Target Start/End: Original strand, 5551 - 5592
Alignment:
Q  237 gttacattattacccccttaaaatagtttcgtcctcaaaact 278  Q
    |||||||| ||||||||||||||||||||||||||| |||||    
T  5551 gttacattcttacccccttaaaatagtttcgtcctcgaaact 5592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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