View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15894_low_14 (Length: 316)

Name: NF15894_low_14
Description: NF15894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15894_low_14
NF15894_low_14
[»] chr2 (1 HSPs)
chr2 (17-97)||(32802549-32802629)
[»] scaffold0248 (1 HSPs)
scaffold0248 (19-97)||(3726-3804)
[»] scaffold0007 (1 HSPs)
scaffold0007 (19-97)||(273037-273115)
[»] chr1 (2 HSPs)
chr1 (19-97)||(1537597-1537675)
chr1 (19-97)||(17767644-17767722)
[»] chr8 (2 HSPs)
chr8 (47-97)||(37392189-37392239)
chr8 (17-55)||(37391977-37392015)


Alignment Details
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 32802549 - 32802629
Alignment:
Q  17 tattcttgcttgccaaatcattgacttgatttatagtttattatgcggaaaataaacaatgagaaaaagaatgtaagtcta 97  Q
    ||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||    
T  32802549 tattcttgcttgccaaatcattggcttgatttgtagtatattatgcggaaaataaacaatgagaaaaagaatgcaagtcta 32802629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 3726 - 3804
Alignment:
Q  19 ttcttgcttgccaaatcattgacttgatttatagtttattatgcggaaaataaacaatgagaaaaagaatgtaagtcta 97  Q
    ||||||||||||||||||||| |||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  3726 ttcttgcttgccaaatcattggcttggtttgtagtatattatgcggaaaataaacaatgagaaaaagaatgtaagtcta 3804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 273115 - 273037
Alignment:
Q  19 ttcttgcttgccaaatcattgacttgatttatagtttattatgcggaaaataaacaatgagaaaaagaatgtaagtcta 97  Q
    ||||||||||||||||||||| |||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  273115 ttcttgcttgccaaatcattggcttggtttgtagtatattatgcggaaaataaacaatgagaaaaagaatgtaagtcta 273037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 1537597 - 1537675
Alignment:
Q  19 ttcttgcttgccaaatcattgacttgatttatagtttattatgcggaaaataaacaatgagaaaaagaatgtaagtcta 97  Q
    ||||||||||||||||||||| |||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  1537597 ttcttgcttgccaaatcattggcttggtttgtagtatattatgcggaaaataaacaatgagaaaaagaatgtaagtcta 1537675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 17767644 - 17767722
Alignment:
Q  19 ttcttgcttgccaaatcattgacttgatttatagtttattatgcggaaaataaacaatgagaaaaagaatgtaagtcta 97  Q
    ||||||||||||||||||||| |||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  17767644 ttcttgcttgccaaatcattggcttggtttgtagtatattatgcggaaaataaacaatgagaaaaagaatgtaagtcta 17767722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 37392189 - 37392239
Alignment:
Q  47 ttatagtttattatgcggaaaataaacaatgagaaaaagaatgtaagtcta 97  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  37392189 ttatagtttattatgcgaaaaataaacaatgagaaaaaggatgtaagtcta 37392239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 37391977 - 37392015
Alignment:
Q  17 tattcttgcttgccaaatcattgacttgatttatagttt 55  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37391977 tattcttgcttgccaaatcattgacttgatttatagttt 37392015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University