View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15894_low_20 (Length: 251)
Name: NF15894_low_20
Description: NF15894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15894_low_20 |
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| [»] scaffold0393 (2 HSPs) |
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Alignment Details
Target: scaffold0393 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 14 - 147
Target Start/End: Complemental strand, 12038 - 11905
Alignment:
| Q |
14 |
caaaggtaaattcaaaagcaaacctgaaagataaaccttccactggggtttccagaaatcctcttaacacctctttgatccactattctagtagctccct |
113 |
Q |
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| T |
12038 |
caaaggtaaattcaaaagcaaacctgaaagataaaccttccactggggtttccagaaatcctcttaacacctctttgatccactattctagtagctccct |
11939 |
T |
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| Q |
114 |
caaaattcttaccaaataagaaatgtaatctggt |
147 |
Q |
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| T |
11938 |
caaaattcttaccaaataagaaatgtaatctggt |
11905 |
T |
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Target: scaffold0393; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 219 - 251
Target Start/End: Complemental strand, 11836 - 11804
Alignment:
| Q |
219 |
gggaagcaatatacttacatataaagttgatca |
251 |
Q |
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| T |
11836 |
gggaagcaatatacttacatataaagttgatca |
11804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 33 - 147
Target Start/End: Complemental strand, 2409696 - 2409582
Alignment:
| Q |
33 |
aaacctgaaagataaaccttccactggggtttccagaaatcctcttaacacctctttgatccactattctagtagctccctcaaaattcttaccaaataa |
132 |
Q |
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| T |
2409696 |
aaacctgaaaaataaaccttccactagggtcaccagaaatcttcttaacacctctttgatccactattctagtagctccctcaaaattcttaccaaataa |
2409597 |
T |
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| Q |
133 |
gaaatgtaatctggt |
147 |
Q |
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| T |
2409596 |
gaaatgtaatctggt |
2409582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 39961918 - 39961988
Alignment:
| Q |
44 |
ataaaccttccactggggtttccagaaatcctcttaacacctctttgatccactattctagtagctccctca |
115 |
Q |
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| T |
39961918 |
ataaaccttccactgggggtcact-aaatcctcttaacacctctttgatcgactattctagtagctccctca |
39961988 |
T |
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