View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15894_low_21 (Length: 250)
Name: NF15894_low_21
Description: NF15894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15894_low_21 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
| [»] scaffold0065 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 3172400 - 3172637
Alignment:
| Q |
13 |
aatatatgtgagtgaagaaaaccaatttgaaaaaacgacacccttgtgccgctccctcattcctaattttccaaatccaaatgttattttcttctctttg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3172400 |
aatatatgtgagtgaagaaaaccaatttgaaaaaacgacacccttgtgccgctccttcattcctaattttccaaatccaaatgttattttcttctctttg |
3172499 |
T |
|
| Q |
113 |
gaggcagttaaattttgaataattagttgtctcaaattgattaaatttgagacatcttttgtagaaaattcaacgtcttcacacccttccaatattagtg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3172500 |
gaggcagttaaattttgaataattagttgtctcaaattgattaaatttgagacatcttttgtagaaaattcaacgtcttcacacccttccaatattagtg |
3172599 |
T |
|
| Q |
213 |
tttgtaggcaaacgatattacttacagatttcaaaaga |
250 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3172600 |
tttgtaggcaaacgatattacttgcagatttcaaaaga |
3172637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 179
Target Start/End: Original strand, 3168952 - 3168994
Alignment:
| Q |
137 |
agttgtctcaaattgattaaatttgagacatcttttgtagaaa |
179 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
3168952 |
agttgtctcaaattgattaaattgtagacatcttttatagaaa |
3168994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 9849800 - 9849836
Alignment:
| Q |
143 |
ctcaaattgattaaatttgagacatcttttgtagaaa |
179 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
9849800 |
ctcaaattgattaattttgagacaacttttgtagaaa |
9849836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 225
Target Start/End: Original strand, 3917865 - 3917946
Alignment:
| Q |
144 |
tcaaattgattaaatttgagacatcttttgtagaaaattcaacgtcttcacacccttccaatattagtgtttgtaggcaaac |
225 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||| |||||| | || ||| ||| |||||||||| |||| | |||||| |
|
|
| T |
3917865 |
tcaaattgattaacttagagacatcttttgtagaaatttcaacttttttacatgctttcaatattagtctttgcaagcaaac |
3917946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 46881 - 46840
Alignment:
| Q |
140 |
tgtctcaaattgattaaatttgagacatcttttgtagaaaat |
181 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
46881 |
tgtctcaaattgattaaatttgagacatttttttgagaaaat |
46840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University