View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15894_low_4 (Length: 581)
Name: NF15894_low_4
Description: NF15894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15894_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 19 - 571
Target Start/End: Complemental strand, 6236635 - 6236083
Alignment:
| Q |
19 |
ctttattgcttcttttctctctagagagggttcaggacttccttattataggattttgatgtaattctgccttttctgtttttgtttcttcctgatgtag |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6236635 |
ctttattgcttcttttctctctagagagggttcaggacttccttattataggattttgatgtaattctgccttttctatttttgtttcttcctgatgtag |
6236536 |
T |
|
| Q |
119 |
accttgttatgggttctggccctctctagttttattgaatttcttcgcttgatcnnnnnnnnnnnnnnnttagattttcacctatcacctaggttttcaa |
218 |
Q |
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|| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6236535 |
actttgttatgggttctggccctcttcagttttattgaatttcttcgcttgat---aaaaaaaaaaaaattagattttcacctatcacctaggttttcaa |
6236439 |
T |
|
| Q |
219 |
tttctattaactaaagcgaaaggggaaatatggtttcgtagacttcttctacttttgttgaatgtgggaacactataatttagaaacaccatgatattat |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
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| T |
6236438 |
tttctattaactaaagcgaaaggggaaatatggtttcgtagacttcttctacttttgttgaatgtgggaacactaaaatttagaaacaccatgatat-at |
6236340 |
T |
|
| Q |
319 |
tgccttgaccggtgaacaaacatcatgtcaaagaactagtactactactatatgcagtgagccctgtagatatggatgtgtttaccttttgtgttatttc |
418 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6236339 |
tgccttgaccagtgaacaaacatcatgtcaaagaactagtactactactatatgcagtgagccctgtagatatggatgtgtttaccttttgtgttatttc |
6236240 |
T |
|
| Q |
419 |
ttcttcatttcgttcttataaatcaaaaaacatagtgacattgattaggaaaataatctacgtagacacaaacacccattctacacccaagatataaata |
518 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
6236239 |
ttgttcatttcgttcttataaatcaaaaaacatagtgacattgattaggaaaataatctacgtagacacaaacacccattctacacccaagatataaaaa |
6236140 |
T |
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| Q |
519 |
aa----tnnnnnnnntagagaaagtgatatgataattgtgatacattgatgatgatg |
571 |
Q |
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| T |
6236139 |
aaaattaaaaaaaaatagagaaagtgatatgataattgtgatacattgatgatgatg |
6236083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 386 - 476
Target Start/End: Complemental strand, 6240435 - 6240344
Alignment:
| Q |
386 |
agatatggatgtgtttaccttttgtgttatttcttcttcatttcgttct-tataaatcaaaaaacatagtgacattgattaggaaaataatc |
476 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||| || | |||||||||||||||||||||| |||||||||||||||||| |
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| T |
6240435 |
agatatggatgtgtttaccttttgtgttatttcatgttcatttgtttgtatataaatcaaaaaacatagtgatgttgattaggaaaataatc |
6240344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 293
Target Start/End: Original strand, 33891807 - 33891908
Alignment:
| Q |
188 |
ttagattttcacctatcacctaggttttcaatttctattaactaaagcgaaaggggaaatatggtttcgtagacttcttctacttttgttgaatgtggga |
287 |
Q |
| |
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||||||||||||| || | |||||||||||||| ||||||||| |||| ||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
33891807 |
ttagattttcacccataaactaggttttcaatta----taactaaagtgaaaagggaaatatggtttctaggacttcttttacttttgttgaatgtgggg |
33891902 |
T |
|
| Q |
288 |
acacta |
293 |
Q |
| |
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|||||| |
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| T |
33891903 |
acacta |
33891908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 293
Target Start/End: Complemental strand, 33952441 - 33952340
Alignment:
| Q |
188 |
ttagattttcacctatcacctaggttttcaatttctattaactaaagcgaaaggggaaatatggtttcgtagacttcttctacttttgttgaatgtggga |
287 |
Q |
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||||||||||||| || | |||||||||||||| ||||||||| |||| ||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
33952441 |
ttagattttcacccataaactaggttttcaatta----taactaaagtgaaaagggaaatatggtttctaggacttcttttacttttgttgaatgtgggg |
33952346 |
T |
|
| Q |
288 |
acacta |
293 |
Q |
| |
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|||||| |
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| T |
33952345 |
acacta |
33952340 |
T |
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