View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15894_low_5 (Length: 498)
Name: NF15894_low_5
Description: NF15894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15894_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 2e-75; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 98 - 294
Target Start/End: Complemental strand, 20928197 - 20927997
Alignment:
| Q |
98 |
ccacatcgctcaggttctcgaacttttgaatgtatatat----gtttgaatacctttagcctttgagctgactgttcaaatagatggtatcatagccaat |
193 |
Q |
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| T |
20928197 |
ccacatcgctcaggttctcaagcttttgaatgtatatatatatgtttgagtacctttagcctttgagctgactgttcagatagatgatatcatagccaat |
20928098 |
T |
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| Q |
194 |
accatcattctttgtatgttagcctttaggcacacgtttaacaaatgaaatgataaaatatatatcatatttatttaactaataaaaattcatcattgtg |
293 |
Q |
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| T |
20928097 |
accatcattctttgcgagttagccttttgacacacgtttaacaaatgaaatgataaaatatatatcatatttatttaactaataaaaattcatcattgtg |
20927998 |
T |
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| Q |
294 |
t |
294 |
Q |
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| T |
20927997 |
t |
20927997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 356 - 446
Target Start/End: Complemental strand, 20927935 - 20927848
Alignment:
| Q |
356 |
cttcaccccctattggatcatgaaggaagtcaagggatgatatattggattaaaaacaaccacataataagtaaattcaacattataactt |
446 |
Q |
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| T |
20927935 |
cttcaccccctattggatcatgaaggaaatcaagcgatgttatattggactaaaaacaaccac---ataggtaaattgaacattataactt |
20927848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 438 - 482
Target Start/End: Complemental strand, 20927455 - 20927411
Alignment:
| Q |
438 |
ttataactttactcataccacattgtttgtaacattgtattttgt |
482 |
Q |
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| T |
20927455 |
ttataactttactcataccacattgtttgtaacattgtattttgt |
20927411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 20928281 - 20928246
Alignment:
| Q |
14 |
cataggcatgttatcaatgaaacaataatataatta |
49 |
Q |
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| T |
20928281 |
cataggcatgttatcaatgaaacaataatataatta |
20928246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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