View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15894_low_8 (Length: 361)
Name: NF15894_low_8
Description: NF15894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15894_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 39561471 - 39561130
Alignment:
| Q |
1 |
agatatgggggtcacaacttattggaaaaggtgagattccatggaaagtgattcttgaatcacaaaacatggagttnnnnnnntggttgaagatatattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39561471 |
agatatgggggtcacaacttattggaaaaggtgagattccatggaaagtgattcttgaatcacaaaacatggagttaaaaaaatggttgaagatatattt |
39561372 |
T |
|
| Q |
101 |
agtgagtggaagtgattgcaaagaggaaatgttctcaacaccagaagtggaggtggagattaaaataagagtagcttcggttgatgagatgacaaagaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||||||| ||||| |||||||||||||| ||||||||| ||||||| |||||| |
|
|
| T |
39561371 |
agtgagtggaagtgattgcaaagaggctatgttcccaacaccagaagtggaagtggaaattaaaataagagtgacttcggttgctgagatggaaaagaag |
39561272 |
T |
|
| Q |
201 |
aataagaggaggttgaataattggaatgagtgtggatgcaagaatggccatggtcatcacgcttggtgcagcgctgaagattgtgatatattcgtgcttg |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39561271 |
aataagagaaggttgaataattggaatgagtgtggatgcaagaatggccatgatcatcacgcttggtgcagcgctgaagattgtgatatattcgtgcttg |
39561172 |
T |
|
| Q |
301 |
gcgcagctttggaggctttttgattttaatgcaagaccgtgc |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39561171 |
gcgcagctttggaggctttttgattttaatgcaagaccgtgc |
39561130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 39568841 - 39568505
Alignment:
| Q |
1 |
agatatgggggtcacaacttattggaaaaggtgagattccatggaaagtgattcttgaatcacaaaacatggagttnnnnnnntggttgaagatatattt |
100 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| || |||| |
|
|
| T |
39568841 |
agatgtgggggtcacaacttattggcaaaggtgagattccatggaaagtgattcttgaatcacaaaacatggagctaaaaaaatggttgaaaatggattt |
39568742 |
T |
|
| Q |
101 |
agtgagtggaagtgattgcaaagaggaaatgttctcaacaccagaagtggaggtggagattaaaataagagtagcttcggttgatgagatgacaaagaaa |
200 |
Q |
| |
|
|||||| |||||||||||||||||| |||||| |||||||||||||||| ||||| |||||||||||||| |||||||||| ||||||| |||||| |
|
|
| T |
39568741 |
ggtgagtagaagtgattgcaaagaggctatgttcccaacaccagaagtggaagtggaaattaaaataagagtggcttcggttgctgagatggaaaagaag |
39568642 |
T |
|
| Q |
201 |
aataagaggaggttgaataattggaatgagtgtggatgcaagaatggccatggtcatcacgcttggtgcagcgctgaagattgtgatatattcgtgcttg |
300 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||| |||| |||| | |||||||||||||| |||||||||||| |||| | ||||| |
|
|
| T |
39568641 |
aataagagaaggttgaataattggaatgagtgtggatgcaaaaatggtcatgatcataatgcttggtgcagcgccgaagattgtgatttatttgcgcttg |
39568542 |
T |
|
| Q |
301 |
gcgcagctttggaggctttttgattttaatgcaagac |
337 |
Q |
| |
|
| |||||||| |||||||||| ||||| ||||||||| |
|
|
| T |
39568541 |
gtgcagctttagaggctttttaattttgatgcaagac |
39568505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 39581632 - 39581965
Alignment:
| Q |
1 |
agatatgggggtcacaacttattggaaaaggtgagattccatggaaagtgattcttgaatcacaaaacatggagttnnnnnnntggttgaagatatattt |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
39581632 |
agatatgggggtcacaacttattgggaaatttgagattccatggaaagtgattcttgaatcacaaaacatggagttaaaaaaatggttgaagatggattt |
39581731 |
T |
|
| Q |
101 |
agtgagtggaagtgattgcaaagaggaaatgttctcaacaccagaagtggaggtggagattaaaataagagtagcttcggttgatgagatgacaaagaaa |
200 |
Q |
| |
|
|||||||||||||||| |||||||| |||||| |||||||||||||||| |||||||||||||||| ||||||||| ||| ||||||| | | || |
|
|
| T |
39581732 |
ggtgagtggaagtgattacaaagagggtatgttcacaacaccagaagtggaagtggagattaaaataaaagtagcttcagtttctgagatggagacgcaa |
39581831 |
T |
|
| Q |
201 |
aataagaggaggttgaataattggaatgagtgtggatgcaagaatggccatggtcatcacgcttggtgcagcgctgaagattgtgatatattcgtgcttg |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| || ||||||| |||| ||||||||| |||| ||||||||||||||||| | ||||| |
|
|
| T |
39581832 |
aataagaggagattgaataattggaatgagtgtggatgcaaaaacggccatgaccatcgtgcttggtgctgcgcagaagattgtgatatatttgcgcttg |
39581931 |
T |
|
| Q |
301 |
gcgcagctttggaggctttttgattttaatgcaa |
334 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||| |
|
|
| T |
39581932 |
gtgcagctttggaggctttttgattttgatgcaa |
39581965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 39571658 - 39571325
Alignment:
| Q |
1 |
agatatgggggtcacaacttattggaaaaggtgagattccatggaaagtgattcttgaatcacaaaacatggagttnnnnnnntggttgaagatatattt |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| |||||||||||||||| |||||||| || |||| |
|
|
| T |
39571658 |
agatatgggggtcacaacttattggcaaaggtgacattccatggaaggtgattcttgaagcacaaaacatggagttaaaaaaatggttgaaaatggattt |
39571559 |
T |
|
| Q |
101 |
agtgagtggaagtgattgcaaagaggaaatgttctcaacaccagaagtggaggtggagattaaaataagagtagcttcggttgatgagatgacaaagaaa |
200 |
Q |
| |
|
|||||||||||||| |||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||| |||| ||||||| ||| || |
|
|
| T |
39571558 |
ggtgagtggaagtgagtgcaaagagggtatgttcagtacaccagaagtggaagtggagattaaaataagagtagcttcagttgttgagatggagaagcaa |
39571459 |
T |
|
| Q |
201 |
aataagaggaggttgaataattggaatgagtgtggatgcaagaatggccatggtcatcacgcttggtgcagcgctgaagattgtgatatattcgtgcttg |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||| |||| |||||| ||||||||||| |||||||| ||||||||||| | | | |
|
|
| T |
39571458 |
aataagaggagattgaataattggaatgagtgtggatgcaaaaatggtcatgatcatcaagcttggtgcagtgctgaagaatgtgatatatttgcattcg |
39571359 |
T |
|
| Q |
301 |
gcgcagctttggaggctttttgattttaatgcaa |
334 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||| |
|
|
| T |
39571358 |
gtgcagctttggaggctttttgattttgatgcaa |
39571325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 39575071 - 39575404
Alignment:
| Q |
1 |
agatatgggggtcacaacttattggaaaaggtgagattccatggaaagtgattcttgaatcacaaaacatggagttnnnnnnntggttgaagatatattt |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
39575071 |
agatgtgggggtcacaacttattggaaaaggtgagattccatggaaagtgattcttgaatcacaaaacatggagttaaaaaaatggttgaagatggattt |
39575170 |
T |
|
| Q |
101 |
agtgagtggaagtgattgcaaagaggaaatgttctcaacaccagaagtggaggtggagattaaaataagagtagcttcggttgatgagatgacaaagaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||| || ||| ||| || | ||||| |||||||||||||||| |||||||||||||| |||||| ||| || |
|
|
| T |
39575171 |
gttgagtggaagtgattgcaaagagggtatattcataacgccgtaggtggaagtggagattaaaataaaagtagcttcggttgcggagatggagaagcaa |
39575270 |
T |
|
| Q |
201 |
aataagaggaggttgaataattggaatgagtgtggatgcaagaatggccatggtcatcacgcttggtgcagcgctgaagattgtgatatattcgtgcttg |
300 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||| || ||||| |||| ||||| |||||||||| | ||||||||||||||||||| | | | |
|
|
| T |
39575271 |
aataagaggagattgaataattggaacaagtgtggatgtaaaaatggtcatgatcatcgagcttggtgcaacactgaagattgtgatatatttgcattag |
39575370 |
T |
|
| Q |
301 |
gcgcagctttggaggctttttgattttaatgcaa |
334 |
Q |
| |
|
| | ||||||||||||||||||||||| |||||| |
|
|
| T |
39575371 |
gtggagctttggaggctttttgattttgatgcaa |
39575404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 39585271 - 39585596
Alignment:
| Q |
1 |
agatatgggggtcacaacttattggaaaaggtgagattccatggaaagtgattcttgaatcacaaaacatggagttnnnnnnntggttgaagatatattt |
100 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || | || |
|
|
| T |
39585271 |
agatgtgggggtcacaacttattgggaaaggtgagattccatggaaagtgattcttgaatcacaaaacatggagttaaaaaaatggttgaaaatggaatt |
39585370 |
T |
|
| Q |
101 |
agtgagtggaagtgattgcaaagaggaaatgttctcaacaccagaagtggaggtggagattaaaataagagtagcttcggttgatgagatgacaaagaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||| |||||||||| |||||||||||||||| ||| ||||||||| ||||||| || ||| |
|
|
| T |
39585371 |
tgtgagtggaagtgattgcaaagagggtatgttcacaacaacagaagtggaagtggagattaaaataaaagttccttcggttgctgagatggagaacaaa |
39585470 |
T |
|
| Q |
201 |
aataagaggaggttgaataattggaatgagtgtggatgcaagaatggccatggtcatcacgcttggtgcagcgctgaagattgtgatatattcgtgcttg |
300 |
Q |
| |
|
||||| |||| |||||||| |||||||||||||||||||| ||||| ||| |||||| || ||||||| | ||||||||||||||||||| | | | |
|
|
| T |
39585471 |
aataaatggagattgaataactggaatgagtgtggatgcaaaaatggtcataatcatcaagcatggtgcaacactgaagattgtgatatatttgcattag |
39585570 |
T |
|
| Q |
301 |
gcgcagctttggaggctttttgattt |
326 |
Q |
| |
|
| | |||||||||||||||||||||| |
|
|
| T |
39585571 |
gtggagctttggaggctttttgattt |
39585596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 39566180 - 39565848
Alignment:
| Q |
1 |
agatatgggggtcacaacttattggaaaaggtgagattccatggaaagtgattcttgaatcacaaaacatggagttnnnnnnntggttgaagatatattt |
100 |
Q |
| |
|
|||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||| |
|
|
| T |
39566180 |
agatgtgggggtcacaacttattgggaaatgtgagattccatggaaagtgattcttgaatcaaaaaacatggagttaaaaaaatggttgaagatggattt |
39566081 |
T |
|
| Q |
101 |
agtgagtggaagtgattgcaaagaggaaatgttctcaacaccagaagtggaggtggagattaaaataagagtagcttcggttgatgagatgacaaagaaa |
200 |
Q |
| |
|
|||||||| ||||||| |||||||| |||||| ||| ||||||||||| |||||||||||||||| |||||| ||||||| ||||||| ||| || |
|
|
| T |
39566080 |
ggtgagtggcagtgatttcaaagagggtatgttcataacgccagaagtggaagtggagattaaaataaaagtagcctcggttgctgagatggagaagcaa |
39565981 |
T |
|
| Q |
201 |
aataagaggaggttgaataattggaatgagtgtggatgcaagaatggccatggtcatcacgcttggtgcagcgctgaagattgtgatatattcgtgcttg |
300 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||| || ||||||| |||| ||||||||| |||| ||||| ||||||||||| | | ||| |
|
|
| T |
39565980 |
aataacaggagattgaataattggaatgagtgtggatgcaaaaacggccatgaccatcgtgcttggtgctgcgcagaagagtgtgatatatttgcgtttg |
39565881 |
T |
|
| Q |
301 |
gcgcagctttggaggctttttgattttaatgcaaga |
336 |
Q |
| |
|
|| |||||||||||||||| |||| |||||||| |
|
|
| T |
39565880 |
gc---gctttggaggctttttagttttgatgcaaga |
39565848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University