View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15895_high_10 (Length: 486)
Name: NF15895_high_10
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15895_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 52 - 478
Target Start/End: Original strand, 52546491 - 52546917
Alignment:
| Q |
52 |
ctaagtgttggctgattttcatatatgtcagcacacacacttcctgttgttcttttcaccaaagatattccattagggtcacctccccattcttcaaaca |
151 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52546491 |
ctaagtgttggctgattttcatatatgtcagcacacacacttcctgttgttcttttcaccaaagatattccattagggtcacctccccattcttcaaaca |
52546590 |
T |
|
| Q |
152 |
caaccaaataatttccacttgggttcaaccatgacctaggaacatggtacctgtccaaatccaaaacaaagtttccatgttatttaaattaaaccattca |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
52546591 |
caaccaaataatttccacttgggttcaaccatgacctaggaacatggtacctgtccaaatccaaaacaaagtttccatgttattcaaattaaaccattca |
52546690 |
T |
|
| Q |
252 |
ctattaaaaaataagatgtacaaaatcttaccatttctgagagggttgtccacaatttgtttgacattttgtctcggcataagttccggcataataacaa |
351 |
Q |
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||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
52546691 |
ctattaaaaaataagatgtacaaaatcttgccatttttgagagggttgtccacaatttgtttgacattttgtctcggcataagttccggcataataaaaa |
52546790 |
T |
|
| Q |
352 |
tcaccacatttaccgcgtgctatatatccaggcatatggcgtccaatgttttgactatttatccatacttgaccctttcccatactactcatatctagag |
451 |
Q |
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| T |
52546791 |
tcaccacatttaccgcgtgctatatatccaggcatatggcgtccaatgtttcgaccatttatccatacttgaccctttcccatactactcatatctagag |
52546890 |
T |
|
| Q |
452 |
ctaatggatcatttcctgatgatgtcc |
478 |
Q |
| |
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| T |
52546891 |
ctaatggatcatttcctgctggtgtcc |
52546917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 329
Target Start/End: Complemental strand, 47536769 - 47536710
Alignment:
| Q |
270 |
tacaaaatcttaccatttctgagagggttgtccacaatttgtttgacattttgtctcggc |
329 |
Q |
| |
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|||||| | |||||| |||||||||||||||||||||| |||| || ||||||| ||||| |
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| T |
47536769 |
tacaaacttttaccaattctgagagggttgtccacaatctgttcgatattttgtttcggc |
47536710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 8e-25; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 277 - 467
Target Start/End: Complemental strand, 17129011 - 17128821
Alignment:
| Q |
277 |
tcttaccatttctgagagggttgtccacaatttgtttgacattttgtctcggcataagttccggcataataacaatcaccacatttaccgcgtgctatat |
376 |
Q |
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| T |
17129011 |
tcttaccatttttgtgtgggttgtccacaatttgttctgcattttttatctgtgaaagttccggcataattacaactgccacaattaccacgagctatat |
17128912 |
T |
|
| Q |
377 |
atccaggcatatggcgtccaatgttttgactatttatccatacttgaccctttcccatactactcatatctagagctaatggatcatttcc |
467 |
Q |
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|| | ||| |||||| |||||| | |||| ||| | ||||| || |||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
17128911 |
atgccggccaatggcgaccaatgctctgaccattaacccatatttcaccctttcccatactactcatatctagagccaatggatcgtttcc |
17128821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 204
Target Start/End: Original strand, 42986470 - 42986565
Alignment:
| Q |
109 |
accaaagatattccattagggtcacctccccattcttcaaacacaaccaaataatttccacttgggttcaaccatgacctaggaacatggtacctg |
204 |
Q |
| |
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|||||| |||| ||||||||||| || ||| ||||||||||||||||||| |||||||| |||| ||| |||||| |||||||||||||||| |
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| T |
42986470 |
accaaaaatatcccattagggtctccacccaattcttcaaacacaaccaataaatttccagttggtatcagccatgaatgaggaacatggtacctg |
42986565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 206
Target Start/End: Complemental strand, 17129188 - 17129081
Alignment:
| Q |
99 |
tgttcttttcaccaaagatattccattagggtcacctccccattcttcaaacacaaccaaataatttccacttgggttcaaccatgacctaggaacatgg |
198 |
Q |
| |
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|||||||||||||| || ||||| ||||||| |||||||||||||| ||||||||||| || || |||||||||| |||||| | ||||| ||| |
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| T |
17129188 |
tgttcttttcaccagtgaaattccggtagggtcgcctccccattcttccaacacaaccaagacgttcccgcttgggttcagccatgatcgaggaatatga |
17129089 |
T |
|
| Q |
199 |
tacctgtc |
206 |
Q |
| |
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|||||||| |
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|
| T |
17129088 |
tacctgtc |
17129081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 274 - 464
Target Start/End: Complemental strand, 5233102 - 5232912
Alignment:
| Q |
274 |
aaatcttaccatttctgagagggttgtccacaatttgtttgacattttgtctcggcataagttccggcataataacaatcaccacatttaccgcgtgcta |
373 |
Q |
| |
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||||||||||||||||| | |||| |||||||||||| ||||||| | | | ||||||| ||||||| ||| ||| |||| || || |||||| |
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| T |
5233102 |
aaatcttaccatttctgtgttggttctccacaatttgtcctgcattttggattagtaaaagttccagcataattacattcatcacaattgccatgtgcta |
5233003 |
T |
|
| Q |
374 |
tatatccaggcatatggcgtccaatgttttgactatttatccatacttgaccctttcccatactactcatatctagagctaatggatcatt |
464 |
Q |
| |
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||||| ||||| ||| || |||||| ||||| |||||||||| || |||||||||||| |||||||||||||| || | ||||||||| |
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| T |
5233002 |
tatatgcaggccaatgacgaccaatgctttgatcgtttatccatatttcaccctttcccatgctactcatatctagtgccactggatcatt |
5232912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 146
Target Start/End: Complemental strand, 5233291 - 5233244
Alignment:
| Q |
99 |
tgttcttttcaccaaagatattccattagggtcacctccccattcttc |
146 |
Q |
| |
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||||||||||||||| || |||||| |||||||||||||||||||||| |
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| T |
5233291 |
tgttcttttcaccaatgaaattccagtagggtcacctccccattcttc |
5233244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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