View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15895_high_20 (Length: 399)

Name: NF15895_high_20
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15895_high_20
NF15895_high_20
[»] chr4 (26 HSPs)
chr4 (44-381)||(2547383-2547720)
chr4 (174-385)||(2376234-2376446)
chr4 (174-242)||(2486297-2486365)
chr4 (175-298)||(2621163-2621286)
chr4 (110-229)||(2460600-2460719)
chr4 (166-305)||(2472019-2472158)
chr4 (173-243)||(2525746-2525816)
chr4 (174-242)||(2491118-2491186)
chr4 (167-222)||(12126890-12126945)
chr4 (175-229)||(2367678-2367732)
chr4 (109-239)||(2381313-2381443)
chr4 (185-302)||(5106326-5106443)
chr4 (175-222)||(12124834-12124881)
chr4 (167-229)||(6007668-6007730)
chr4 (192-241)||(2519224-2519273)
chr4 (110-151)||(2525949-2525990)
chr4 (110-151)||(2625303-2625344)
chr4 (110-151)||(5101958-5101999)
chr4 (95-151)||(2467683-2467739)
chr4 (186-298)||(2477502-2477614)
chr4 (100-151)||(12126967-12127018)
chr4 (14-43)||(2547736-2547765)
chr4 (110-151)||(12124911-12124952)
chr4 (110-150)||(2360929-2360969)
chr4 (174-242)||(2536575-2536643)
chr4 (110-150)||(5106230-5106270)
[»] chr1 (2 HSPs)
chr1 (177-307)||(15837967-15838097)
chr1 (174-218)||(52085556-52085600)
[»] chr5 (3 HSPs)
chr5 (177-229)||(32268773-32268825)
chr5 (171-215)||(41900254-41900298)
chr5 (171-209)||(32268817-32268855)
[»] chr8 (2 HSPs)
chr8 (174-236)||(39516853-39516915)
chr8 (177-229)||(32152209-32152261)
[»] chr6 (2 HSPs)
chr6 (186-230)||(6437151-6437195)
chr6 (184-230)||(7993319-7993365)
[»] chr3 (1 HSPs)
chr3 (174-230)||(51763153-51763209)
[»] chr2 (1 HSPs)
chr2 (174-221)||(44575184-44575231)
[»] chr7 (2 HSPs)
chr7 (174-220)||(15091356-15091402)
chr7 (110-151)||(2576265-2576306)


Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 44 - 381
Target Start/End: Complemental strand, 2547720 - 2547383
Alignment:
Q  44 atccaatatacccaaaaaccctaagaaacgagcaagaagaacaatgacggtggcaacatgtccctgtttaccagatgagttatgggagcacatcttcaaa 143  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2547720 atccaatatacccaaaaaccctaagaaacgaacaagaagaacaatgacggtggcaacatgtccctatttaccagatgagttatgggagcacatcttcaaa 2547621  T
Q  144 ttcctcaatgtctacgatgacgctttaaaatctctctccatcgtctccaaacagtttctgtccatcaccaaccgtctccggttctcagtcacaatctcca 243  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2547620 ttcctcaatgtctacgaggacgctttaaaatcgctctccatcgtctccaaacagtttctgtccatcaccaaccgtctccggttctcagtcacaatctcca 2547521  T
Q  244 gtcagatcatcctttcccttcctcacttcttccaaaggttccctaacatcacatcactcgacctcacacacttatctcgagacattgaccttaacacact 343  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2547520 gtcatatcatcctttcccttcctcacttcttccaaaggttccctaacatcacatcactcgacctcacacacttatcccgagacattgaccttaacacact 2547421  T
Q  344 tcttaccctaatctccactctccctataaacgtcaaat 381  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2547420 tcttaccctaatctccactctccctataaacgtcaaat 2547383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 174 - 385
Target Start/End: Original strand, 2376234 - 2376446
Alignment:
Q  174 tctctctccatcgtctccaaacagtttctgtccatcaccaaccgtctccggttctcagtcacaatctccag-tcagatcatcctttcccttcctcacttc 272  Q
    |||||||||||||||||||||   ||||| ||||||||||||||| |||| ||||| |||||||    ||| ||| | | | |||| | |||| | | |     
T  2376234 tctctctccatcgtctccaaaacttttctctccatcaccaaccgtttccgattctcggtcacaaatcacagatcaaaccgttcttttcattccccgccta 2376333  T
Q  273 ttccaaaggttccctaacatcacatcactcgacctcacacacttatctcgagacattgaccttaacacacttcttaccctaatctccactctccctataa 372  Q
    |||| ||||||||||||||||||||| ||||||||||||||||| |||||||  | ||||||  || | ||| |||||| |||||||||| ||||| ||     
T  2376334 ttccgaaggttccctaacatcacatccctcgacctcacacacttttctcgagtgagtgacctcgacgctcttgttacccaaatctccactttccctttag 2376433  T
Q  373 acgtcaaattgat 385  Q
    || ||||||||||    
T  2376434 acctcaaattgat 2376446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 2486365 - 2486297
Alignment:
Q  174 tctctctccatcgtctccaaacagtttctgtccatcaccaaccgtctccggttctcagtcacaatctcc 242  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  2486365 tctctctccctcgtctcaaaacagtttctgtccatcaccaaccgtctccgattctcggtcacaatctcc 2486297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 175 - 298
Target Start/End: Original strand, 2621163 - 2621286
Alignment:
Q  175 ctctctccatcgtctccaaacagtttctgtccatcaccaaccgtctccggttctcagtcacaatctccagtcagatcatcctttcccttcctcacttctt 274  Q
    |||||||| |||| |||||||||||| ||||||||||||||||||| ||||||||  |||||||||||  | | | ||||| || | |||||| | ||||    
T  2621163 ctctctccctcgtatccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctctt 2621262  T
Q  275 ccaaaggttccctaacatcacatc 298  Q
    | | ||||||||||| ||||||||    
T  2621263 cgacaggttccctaatatcacatc 2621286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 110 - 229
Target Start/End: Complemental strand, 2460719 - 2460600
Alignment:
Q  110 tttaccagatgagttatgggagcacatcttcaaattcctcaatgtctacgatgacgctttaaaatctctctccatcgtctccaaacagtttctgtccatc 209  Q
    ||||||||| ||  ||||||||  |||||||||||||||| | | | || |  || |||| |||||||||||||| |||||||||||||| || ||||||    
T  2460719 tttaccagaggaaatatgggagagcatcttcaaattcctcgacgacaaccaccacactttcaaatctctctccatggtctccaaacagttcctctccatc 2460620  T
Q  210 accaaccgtctccggttctc 229  Q
    ||||| |||||||| |||||    
T  2460619 accaatcgtctccgattctc 2460600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 166 - 305
Target Start/End: Complemental strand, 2472158 - 2472019
Alignment:
Q  166 ctttaaaatctctctccatcgtctccaaacagtttctgtccatcaccaaccgtctccggttctcagtcacaatctccagtcagatcatcctttcccttcc 265  Q
    |||| |||||||| ||||| ||||||||||||||| | ||||||||||| |||||| | |||||  ||||||||| | || | |  |||| || |||||     
T  2472158 ctttcaaatctctttccatggtctccaaacagtttttctccatcaccaatcgtctctgattctccctcacaatctactgtgaaacaatccctttccttca 2472059  T
Q  266 tcacttcttccaaaggttccctaacatcacatcactcgac 305  Q
    |||| ||||| |||||||||||||| |||| || ||||||    
T  2472058 tcacctcttcgaaaggttccctaacctcacctctctcgac 2472019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 2525816 - 2525746
Alignment:
Q  173 atctctctccatcgtctccaaacagtttctgtccatcaccaaccgtctccggttctcagtcacaatctcca 243  Q
    |||||||||| ||||||| |||||||||||||||||||||||| |||| || ||||  |||||||||||||    
T  2525816 atctctctccctcgtctcaaaacagtttctgtccatcaccaacagtcttcgattcttggtcacaatctcca 2525746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 2491186 - 2491118
Alignment:
Q  174 tctctctccatcgtctccaaacagtttctgtccatcaccaaccgtctccggttctcagtcacaatctcc 242  Q
    ||||||||  ||||||| |||||||||||||||||||| ||||||||||| || || ||||||||||||    
T  2491186 tctctctcactcgtctcaaaacagtttctgtccatcacaaaccgtctccgattttcggtcacaatctcc 2491118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 12126945 - 12126890
Alignment:
Q  167 tttaaaatctctctccatcgtctccaaacagtttctgtccatcaccaaccgtctcc 222  Q
    ||||||| |||||||||| ||||||||||| ||||| |||||||||||||||||||    
T  12126945 tttaaaacctctctccattgtctccaaacaatttctctccatcaccaaccgtctcc 12126890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 2367678 - 2367732
Alignment:
Q  175 ctctctccatcgtctccaaacagtttctgtccatcaccaaccgtctccggttctc 229  Q
    |||| ||||||||||||||||| ||||| |||||||||||||||||||| |||||    
T  2367678 ctctttccatcgtctccaaacaatttctctccatcaccaaccgtctccgattctc 2367732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 109 - 239
Target Start/End: Original strand, 2381313 - 2381443
Alignment:
Q  109 gtttaccagatgagttatgggagcacatcttcaaattcctcaatgtctacgatgacgctttaaaatctctctccatcgtctccaaacagtttctgtccat 208  Q
    |||||||||||||  |||||||  ||||| |||||||||||||||   || |   | |||| || ||||| |||||||||||||||||||| || || ||    
T  2381313 gtttaccagatgacctatgggaatacatcatcaaattcctcaatggagaccactgcactttcaagtctctttccatcgtctccaaacagttactctcgat 2381412  T
Q  209 caccaaccgtctccggttctcagtcacaatc 239  Q
    ||||||| ||||||| ||||| |||| ||||    
T  2381413 caccaacagtctccgattctccgtcaaaatc 2381443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 302
Target Start/End: Original strand, 5106326 - 5106443
Alignment:
Q  185 cgtctccaaacagtttctgtccatcaccaaccgtctccggttctcagtcacaatctccagtcagatcatcctttcccttcctcacttcttccaaaggttc 284  Q
    |||||| ||||||||| ||||||||||||||||||  || ||||| ||||||||| | | ||| | ||||| || | ||| || | ||||| ||||||||    
T  5106326 cgtctcaaaacagtttttgtccatcaccaaccgtcctcgattctcggtcacaatcactaatcaaaccatccctttcattcatcgcctcttcaaaaggttc 5106425  T
Q  285 cctaacatcacatcactc 302  Q
    ||| || |||||||||||    
T  5106426 ccttacgtcacatcactc 5106443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 12124881 - 12124834
Alignment:
Q  175 ctctctccatcgtctccaaacagtttctgtccatcaccaaccgtctcc 222  Q
    |||||||||| ||||||||||| ||||| |||||||||||||||||||    
T  12124881 ctctctccattgtctccaaacaatttctctccatcaccaaccgtctcc 12124834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 6007730 - 6007668
Alignment:
Q  167 tttaaaatctctctccatcgtctccaaacagtttctgtccatcaccaaccgtctccggttctc 229  Q
    |||| ||||||||||| ||||||| |||||||| || |||||||||||| ||||||| |||||    
T  6007730 tttagaatctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctc 6007668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 2519273 - 2519224
Alignment:
Q  192 aaacagtttctgtccatcaccaaccgtctccggttctcagtcacaatctc 241  Q
    ||||||||||||||||||||||||||| | || | |||||||||||||||    
T  2519273 aaacagtttctgtccatcaccaaccgttttcgatcctcagtcacaatctc 2519224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 2525990 - 2525949
Alignment:
Q  110 tttaccagatgagttatgggagcacatcttcaaattcctcaa 151  Q
    ||||||||| ||||||||||| ||||||||||||||||||||    
T  2525990 tttaccagaggagttatgggaacacatcttcaaattcctcaa 2525949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 2625303 - 2625344
Alignment:
Q  110 tttaccagatgagttatgggagcacatcttcaaattcctcaa 151  Q
    ||||||||| ||||||||||| ||||||||||||||||||||    
T  2625303 tttaccagaggagttatgggaacacatcttcaaattcctcaa 2625344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 5101958 - 5101999
Alignment:
Q  110 tttaccagatgagttatgggagcacatcttcaaattcctcaa 151  Q
    |||||| |||||||||||||||| ||||||||||||||||||    
T  5101958 tttaccggatgagttatgggagcgcatcttcaaattcctcaa 5101999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 2467739 - 2467683
Alignment:
Q  95 ggcaacatgtccctgtttaccagatgagttatgggagcacatcttcaaattcctcaa 151  Q
    |||||||||| | | ||||||| | ||||||||||||| ||||||||||||||||||    
T  2467739 ggcaacatgttcatatttaccaaaggagttatgggagcgcatcttcaaattcctcaa 2467683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 298
Target Start/End: Complemental strand, 2477614 - 2477502
Alignment:
Q  186 gtctccaaacagtttctgtccatcaccaaccgtctccggttctcagtcacaatctccagtcagatcatcctttcccttcctcacttcttccaaaggttcc 285  Q
    ||||| ||| ||||||||||||| |||||| |||| || ||||| || ||||| |||  ||| | ||||| |||||||| ||   |||| ||||||||||    
T  2477614 gtctcaaaagagtttctgtccataaccaacagtcttcgattctctgtgacaatttccgatcaaaccatcccttcccttcatcctctctttcaaaggttcc 2477515  T
Q  286 ctaacatcacatc 298  Q
    ||||| |||||||    
T  2477514 ctaacgtcacatc 2477502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 100 - 151
Target Start/End: Complemental strand, 12127018 - 12126967
Alignment:
Q  100 catgtccctgtttaccagatgagttatgggagcacatcttcaaattcctcaa 151  Q
    ||||||| | |||||| |||||||||||||||  ||||||||||||||||||    
T  12127018 catgtccatatttacctgatgagttatgggagatcatcttcaaattcctcaa 12126967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 43
Target Start/End: Complemental strand, 2547765 - 2547736
Alignment:
Q  14 gaaggaattgagagactctcttacgatggc 43  Q
    ||||||||||||||||||||||||||||||    
T  2547765 gaaggaattgagagactctcttacgatggc 2547736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 12124952 - 12124911
Alignment:
Q  110 tttaccagatgagttatgggagcacatcttcaaattcctcaa 151  Q
    ||||||||||||| ||||||||  ||||||||||||||||||    
T  12124952 tttaccagatgagatatgggagatcatcttcaaattcctcaa 12124911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 2360929 - 2360969
Alignment:
Q  110 tttaccagatgagttatgggagcacatcttcaaattcctca 150  Q
    ||||||||||||| ||||||| |||||| ||||||||||||    
T  2360929 tttaccagatgagctatgggaacacatcatcaaattcctca 2360969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 2536643 - 2536575
Alignment:
Q  174 tctctctccatcgtctccaaacagtttctgtccatcaccaaccgtctccggttctcagtcacaatctcc 242  Q
    ||||||||| || | || ||||||||||||||||||||||||| ||| || ||||  |||| |||||||    
T  2536643 tctctctccctcatttcaaaacagtttctgtccatcaccaaccttcttcgattcttggtcaaaatctcc 2536575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 5106230 - 5106270
Alignment:
Q  110 tttaccagatgagttatgggagcacatcttcaaattcctca 150  Q
    |||||| |||||||||||||||  |||||||||||||||||    
T  5106230 tttaccggatgagttatgggagggcatcttcaaattcctca 5106270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 177 - 307
Target Start/End: Original strand, 15837967 - 15838097
Alignment:
Q  177 ctctccatcgtctccaaacagtttctgtccatcaccaaccgtctccggttctcagtcacaatctccagtcagatcatcctttcccttcctcacttcttcc 276  Q
    ||||| || ||||||||||||||||| |||||||||||||||||||| |||||  ||| ||||     ||| |  |||| || | ||||| || ||||||    
T  15837967 ctctcgatggtctccaaacagtttctctccatcaccaaccgtctccgattctccctcaaaatcatagatcaaacaatccctttcattcctaacctcttcc 15838066  T
Q  277 aaaggttccctaacatcacatcactcgacct 307  Q
    |||||||||||||| | ||||| ||||||||    
T  15838067 aaaggttccctaacctaacatctctcgacct 15838097  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 52085600 - 52085556
Alignment:
Q  174 tctctctccatcgtctccaaacagtttctgtccatcaccaaccgt 218  Q
    ||||| ||||||||||||||| |||| || |||||||||||||||    
T  52085600 tctctttccatcgtctccaaaaagttcctttccatcaccaaccgt 52085556  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 32268825 - 32268773
Alignment:
Q  177 ctctccatcgtctccaaacagtttctgtccatcaccaaccgtctccggttctc 229  Q
    ||||||||||||||||||||||| || ||||||||||||||||| || |||||    
T  32268825 ctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattctc 32268773  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 41900254 - 41900298
Alignment:
Q  171 aaatctctctccatcgtctccaaacagtttctgtccatcaccaac 215  Q
    |||||||||||  ||||||||||||||||||| ||||||||||||    
T  41900254 aaatctctctcactcgtctccaaacagtttctctccatcaccaac 41900298  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 209
Target Start/End: Complemental strand, 32268855 - 32268817
Alignment:
Q  171 aaatctctctccatcgtctccaaacagtttctgtccatc 209  Q
    ||||||||||||||||||||||||||||| || ||||||    
T  32268855 aaatctctctccatcgtctccaaacagttactctccatc 32268817  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 39516915 - 39516853
Alignment:
Q  174 tctctctccatcgtctccaaacagtttctgtccatcaccaaccgtctccggttctcagtcaca 236  Q
    ||||||||||||||||||| ||| |||||  ||||||||||||||||| | ||||| ||||||    
T  39516915 tctctctccatcgtctccagacaatttctcgccatcaccaaccgtctcagattctccgtcaca 39516853  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 32152261 - 32152209
Alignment:
Q  177 ctctccatcgtctccaaacagtttctgtccatcaccaaccgtctccggttctc 229  Q
    |||||| |||||||||||||||| || |||||||||||| ||||||| |||||    
T  32152261 ctctccctcgtctccaaacagttcctctccatcaccaacagtctccgattctc 32152209  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 6437195 - 6437151
Alignment:
Q  186 gtctccaaacagtttctgtccatcaccaaccgtctccggttctca 230  Q
    |||||||||||||| || ||||||||||||||||||| |||||||    
T  6437195 gtctccaaacagttcctctccatcaccaaccgtctcctgttctca 6437151  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 7993319 - 7993365
Alignment:
Q  184 tcgtctccaaacagtttctgtccatcaccaaccgtctccggttctca 230  Q
    |||||||||||||||| || |||||||||| ||||||||| ||||||    
T  7993319 tcgtctccaaacagttcctctccatcaccagccgtctccgattctca 7993365  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 51763153 - 51763209
Alignment:
Q  174 tctctctccatcgtctccaaacagtttctgtccatcaccaaccgtctccggttctca 230  Q
    |||||||||||||| ||||||||||| || ||||||||| ||||| |||| ||||||    
T  51763153 tctctctccatcgtttccaaacagttcctctccatcacccaccgtttccgattctca 51763209  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 44575184 - 44575231
Alignment:
Q  174 tctctctccatcgtctccaaacagtttctgtccatcaccaaccgtctc 221  Q
    ||||||||||||||||| ||||||||||| || |||||||| ||||||    
T  44575184 tctctctccatcgtctcaaaacagtttctctcaatcaccaatcgtctc 44575231  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 15091356 - 15091402
Alignment:
Q  174 tctctctccatcgtctccaaacagtttctgtccatcaccaaccgtct 220  Q
    ||||||||| |||||||||||||||| || |||||||||||| ||||    
T  15091356 tctctctccctcgtctccaaacagttcctctccatcaccaacagtct 15091402  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 2576265 - 2576306
Alignment:
Q  110 tttaccagatgagttatgggagcacatcttcaaattcctcaa 151  Q
    ||||| |||||||||||||| ||||||||||| |||||||||    
T  2576265 tttactagatgagttatgggggcacatcttcatattcctcaa 2576306  T

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