View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15895_high_22 (Length: 390)
Name: NF15895_high_22
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15895_high_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 17 - 380
Target Start/End: Complemental strand, 42924895 - 42924535
Alignment:
| Q |
17 |
acaaagaatctttctccatctgaaacggtggatagagatggaaactgaaatgaaatagggtatggtggtaaatgtgcaagtcacgaggcagaatccagat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42924895 |
acaaagaatctttctccatctgaaacggtggatagagatggaaactgaaatgaaatagggtatggtggtaaatgtgcaagtcacgaggcagaatccagat |
42924796 |
T |
|
| Q |
117 |
gtttacaaatatgagaaacagcgtggttctggcaattgcaattgcatcagtagtgttagagtgctgctataaatcatgtttgattattcatacttccggg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42924795 |
gtttacaaatatgagaaacagcgtggttctggcaatcgcaattgcatcagtagtgtt----tgctgctataaatcatgtttgattattcatacttccggg |
42924700 |
T |
|
| Q |
217 |
ggaaataattgtttaaatttacctttagtaataagatatggtgtcgataacttcacgctgtgctatgtaaccagtaatgct-gagaccatagagtgtttt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
42924699 |
ggaaataattgtttaaatttacctttagtaataagatatggtgttgataacttcacgctgtgttatgtaaccagtaatgctatagaccatagagtgtttt |
42924600 |
T |
|
| Q |
316 |
ctaaatccttgcaactatgtctttgtcgatataagttaaattcttattacttgaactaacctttg |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42924599 |
ctaaatccttgcaactatgtctttgtcgatataagttaaattcttattacttgaactaacctttg |
42924535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University