View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15895_high_24 (Length: 383)
Name: NF15895_high_24
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15895_high_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 307
Target Start/End: Original strand, 9282793 - 9283082
Alignment:
| Q |
12 |
ataggttgtactctgataaaagtgtttacatgctttgtgtggaagtgttggttgcaacatcccatattcgacgatcaggttattggtatggtatttggca |
111 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9282793 |
ataggttgtactctgttaaaagtgcttacatgctttgtgtggaaatgttggttgcaacatcccatattcgacgatcaggttattggtatggtatttggcg |
9282892 |
T |
|
| Q |
112 |
cctaaatgtgccacctaaagtaaatnnnnnnngtgagtccactcattaagacttggggtatgcaattttttattgccctttttccacacaagtttagtgt |
211 |
Q |
| |
|
||||||||| | ||| ||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9282893 |
cctaaatgtaaaaaagaaaaaaaa------aagtgagtccactcatgaagacttggggcatgcaattttttattgccctttttctacacaagtttagtga |
9282986 |
T |
|
| Q |
212 |
gtgtctggaatatgggacaatattcataaagttgttcgcactagtacttcaacatcaaaagccatcttcttattactacaacaacttacgtcggac |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
9282987 |
gtgtctggaatatgggacaatattcataaagttgttcgcactactacttcaacatcagaagcaatcttcttattactacaacaactcacgtcggac |
9283082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 6979968 - 6979881
Alignment:
| Q |
222 |
tatgggacaatattcataaagttgttcgcactagtacttcaacatcaaaagccatcttcttattactacaacaacttacgtcggacctc |
310 |
Q |
| |
|
|||||||| | |||||||||||||||| ||||| |||||| |||||| |||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
6979968 |
tatgggacgacattcataaagttgttcacactactacttcgacatcagaagccatctt-ttattactacaacaactcacgtcggacctc |
6979881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University