View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15895_high_25 (Length: 377)
Name: NF15895_high_25
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15895_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 7 - 342
Target Start/End: Complemental strand, 40383690 - 40383355
Alignment:
| Q |
7 |
tccaagaatatattcaataccataatttgtttagtagtatggtatattatatacacacacatatattacataccctagctttcttggagcagtaagtggt |
106 |
Q |
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| T |
40383690 |
tccaataacatattcaataccataatttgtttagtagtatggtatattatatacacacatatatattacataccctagctttcttggagcagtaagtggt |
40383591 |
T |
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| Q |
107 |
atagatgacgaggtaaattgtttctatcacacaaccaaatgcattgatggtgatgataagcatttcacccgtttttatgtaagcataaaatatccaaagc |
206 |
Q |
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| T |
40383590 |
atagatgactaggtaaattgtttctatcacacaaccaaatgcattgatggtgatgataagcatttcacccgtttttatgtaagcataaaatatccaaagc |
40383491 |
T |
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| Q |
207 |
attgcactgaagagtgcagccacatatggagcagattggaaacctcctgttgttttcttcttacaaacttgataaaatattgacctgcaaagcatacata |
306 |
Q |
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| T |
40383490 |
attgcactgaagagtgcagccacatatggagcagattggaaacctcctgttgttttcttcttacaaacttgataaaatattgacctgcaaagcatacata |
40383391 |
T |
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| Q |
307 |
tatgtgtttatttgaatattaatcattgttatgtac |
342 |
Q |
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| T |
40383390 |
tatgtgtttatttgaatattaatcattgttatgtac |
40383355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 115 - 297
Target Start/End: Complemental strand, 45310338 - 45310156
Alignment:
| Q |
115 |
cgaggtaaattgtttctatcacacaaccaaatgcattgatggtgatgataagcatttcacccgtttttatgtaagcataaaatatccaaagcattgcact |
214 |
Q |
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||||||||||||| |||||||||||||| ||||||||||||||||| | ||| |||||||| | || | || |||||||| ||||||||||||||||| |
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| T |
45310338 |
cgaggtaaattgtctctatcacacaaccgaatgcattgatggtgataagaagagtttcacccttcttggtataggcataaaacatccaaagcattgcact |
45310239 |
T |
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| Q |
215 |
gaagagtgcagccacatatggagcagattggaaacctcctgttgttttcttcttacaaacttgataaaatattgacctgcaaa |
297 |
Q |
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|| |||||||||||||||||| |||||||||||| |||||| |||||||||||||| | |||||||| ||| ||||||| |
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| T |
45310238 |
aaatagtgcagccacatatggaattgattggaaaccttctgttgatttcttcttacaaattcgataaaatgttggtctgcaaa |
45310156 |
T |
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