View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15895_high_26 (Length: 354)
Name: NF15895_high_26
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15895_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 43008074 - 43007724
Alignment:
| Q |
1 |
aaatcaggcgcttcaaatcgaataaaggcacctctgttacccatctacaaaaacaatgaaaatcaggnnnnnnnnnnnnnnnnnct---tcataggagga |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
43008074 |
aaatcaggcgcttcaaatcgaataaaggcacctctgttacccatctacaaaaacaatgaaaatcaggatatatatctatatatactacttcataggagga |
43007975 |
T |
|
| Q |
98 |
taagcgattacttaaataaatacattaatataagaagcgtgtggcatggtcacaactcacaataattttcgtgcacatgccgtaaattattcaagaaaga |
197 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43007974 |
taagtgattacttaaataaatacattaatataagaagcgtgtggcatggtcacaactcacaataattttcgtgcacatgccgtaaattattcaagaaaga |
43007875 |
T |
|
| Q |
198 |
aggttgtaacaaaagaggcatggttacctgatcacagtaatttggagcagaaaatacagttatgagtttaccgtcatgttgaatctcataacccttgcgc |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43007874 |
aggttgtaacaaaagaggcatggttacctgatcacagtaatttggagcagaaaatacagttatgagtttaccgtcatgttgaatctcataacccttgcgc |
43007775 |
T |
|
| Q |
298 |
tttgattcatgagatcgcacaactaaatctgtaaaatgataattcatatca |
348 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43007774 |
tttgattcatgagatcgcacaactaaatctgtaaaaggataattcatatca |
43007724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 117 - 348
Target Start/End: Complemental strand, 43000617 - 43000387
Alignment:
| Q |
117 |
atacattaatataagaagcgtgtggcatggtcacaactcacaataattttcgtgcacatgccgtaaa-ttattcaagaaagaaggttgtaacaaaagagg |
215 |
Q |
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|||||||||||| | ||||||||||||||||||||||||| ||||||||| |||||||||| |||| ||||||||||||||||||||| ||||||||| |
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| T |
43000617 |
atacattaatatcataagcgtgtggcatggtcacaactca--ataattttcctgcacatgccataaaattattcaagaaagaaggttgtgacaaaagaga |
43000520 |
T |
|
| Q |
216 |
catggttacctgatcacagtaatttggagcagaaaatacagttatgagtttaccgtcatgttgaatctcataacccttgcgctttgattcatgagatcgc |
315 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||| | |
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| T |
43000519 |
catggttaccttatcacagtaatttggagcagaaaatacagttatgagtttaccgtcatgttgaatctcataacccttgtgcattgatttatgagatctc |
43000420 |
T |
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| Q |
316 |
acaactaaatctgtaaaatgataattcatatca |
348 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
43000419 |
acaactaaatctgtaaaatgataattcatatca |
43000387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 43000723 - 43000678
Alignment:
| Q |
1 |
aaatcaggcgcttcaaatcgaataaaggcacctctgttacccatct |
46 |
Q |
| |
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|||||||| |||||||||||||||||||||||| |||||||| ||| |
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|
| T |
43000723 |
aaatcaggtgcttcaaatcgaataaaggcacctttgttacccttct |
43000678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 9e-58; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 181 - 346
Target Start/End: Complemental strand, 19319882 - 19319717
Alignment:
| Q |
181 |
aaattattcaagaaagaaggttgtaacaaaagaggcatggttacctgatcacagtaatttggagcagaaaatacagttatgagtttaccgtcatgttgaa |
280 |
Q |
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|
|||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
19319882 |
aaattattcaagaaagaaggttgtaacagaagggatatggttacctgatcacagtaatttggagcagaaaatacagttatgagtttaccgtcatgatcaa |
19319783 |
T |
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| Q |
281 |
tctcataacccttgcgctttgattcatgagatcgcacaactaaatctgtaaaatgataattcatat |
346 |
Q |
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||||||||||| | |||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
19319782 |
cctcataaccctcgtcctttacttcatgagatcgcacaactaaatctgtaaagtgataattcatat |
19319717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 19320027 - 19319965
Alignment:
| Q |
1 |
aaatcaggcgcttcaaatcgaataaaggcacctctgttacccatctaca-aaaacaatgaaaa |
62 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
19320027 |
aaatcaggcgcttcaaatcgaataaaggcacctttgttacccatctacagaaaacaatgaaaa |
19319965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 19319948 - 19319887
Alignment:
| Q |
85 |
cttcataggaggataagcgattacttaaataaatacattaatataagaagcgtgtggcatggtcac |
150 |
Q |
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||||||||||||||||| |||| |||||||| ||||||||||||||| |||||||| |||||| |
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| T |
19319948 |
cttcataggaggataagtgattgcttaaata----cattaatataagaagtgtgtggcacggtcac |
19319887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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