View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15895_high_28 (Length: 345)
Name: NF15895_high_28
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15895_high_28 |
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| [»] scaffold0005 (1 HSPs) |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 227554 - 227210
Alignment:
| Q |
1 |
tgaatgataaggcacttgttagacacttatctgcatgtgaaacaatgggttctgctggttgtatttgcactgataaaactggaactttgaccacaaatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
227554 |
tgaatgataaggcacttgttagacacttatctgcatgtgaaacaatgggttctgctggttgtatttgcactgataaaactggaactttgaccacaaatca |
227455 |
T |
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| Q |
101 |
aatggttgttgacaaaatatggatttgtgaacaaactaagccgattaaaaccggaaatcgagatgatggtaatttattaaagaactcaatttccgaggag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
227454 |
aatggttgttgacaaaatatggatttgtgaacaaactaagccgattaaaactggaaatcgtgatgatggtaatttattgaagaactcaatttccgaggag |
227355 |
T |
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| Q |
201 |
atattcgatctctttttgcagtcaatatttcagaatactgcctcagaggttgtgaaaggtgaagatggaaagaacaaggtgatgggaactccaacagaat |
300 |
Q |
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| T |
227354 |
atattcgatctctttttgcagtcaatatttcagaatactgcctcagaggttgtgaaaggtgaagatggaaagaacaaggtgatgggaactccaacagaat |
227255 |
T |
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| Q |
301 |
cagcattgcttggatttggttagattttaggaggtgatactaagt |
345 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
227254 |
cagcattgcttggatttggtttgattttaggaggtgatactaagt |
227210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 14589824 - 14590168
Alignment:
| Q |
1 |
tgaatgataaggcacttgttagacacttatctgcatgtgaaacaatgggttctgctggttgtatttgcactgataaaactggaactttgaccacaaatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14589824 |
tgaatgataaggcacttgttagacacttatctgcatgtgaaacaatgggttctgctggttgtatttgcactgataaaactggaactttgaccacaaatca |
14589923 |
T |
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| Q |
101 |
aatggttgttgacaaaatatggatttgtgaacaaactaagccgattaaaaccggaaatcgagatgatggtaatttattaaagaactcaatttccgaggag |
200 |
Q |
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| T |
14589924 |
aatggttgttgacaaaatatggatttgtgaacaaactaagccgattaaaactggaaatcgtgatgatggtaatttattgaagaactcaatttccgaggag |
14590023 |
T |
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| Q |
201 |
atattcgatctctttttgcagtcaatatttcagaatactgcctcagaggttgtgaaaggtgaagatggaaagaacaaggtgatgggaactccaacagaat |
300 |
Q |
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| T |
14590024 |
atattcgatctctttttgcagtcaatatttcagaatactgcctcagaggttgtgaaaggtgaagatggaaagaacaaggtgatgggaactccaacagaat |
14590123 |
T |
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| Q |
301 |
cagcattgcttggatttggttagattttaggaggtgatactaagt |
345 |
Q |
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| T |
14590124 |
cagcattgcttggatttggtttgattttaggaggtgatactaagt |
14590168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 1610549 - 1610679
Alignment:
| Q |
1 |
tgaatgataaggcacttgttagacacttatctgcatgtgaaacaatgggttctgctggttgtatttgcactgataaaactggaactttgaccacaaatca |
100 |
Q |
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||||||||| ||| ||||| ||||| | ||||||||||| || |||||||| ||| |||| |||||||||||||| || ||||| |||| || || || |
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| T |
1610549 |
tgaatgatagggcgcttgtcagacatctttctgcatgtgagactatgggttcagctagttgcatttgcactgataagacaggaacgttgatgaccaacca |
1610648 |
T |
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| Q |
101 |
aatggttgttgacaaaatatggatttgtgaa |
131 |
Q |
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| T |
1610649 |
tatggtggttgataaaatttggatatgtgaa |
1610679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 1624934 - 1625064
Alignment:
| Q |
1 |
tgaatgataaggcacttgttagacacttatctgcatgtgaaacaatgggttctgctggttgtatttgcactgataaaactggaactttgaccacaaatca |
100 |
Q |
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||||||||| ||| ||||| ||||| | ||||||||||| || |||||||| ||| |||| |||||||||||||| || ||||| |||| || || || |
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| T |
1624934 |
tgaatgatagggcgcttgtcagacatctttctgcatgtgagactatgggttcagctagttgcatttgcactgataagacaggaacgttgatgaccaacca |
1625033 |
T |
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| Q |
101 |
aatggttgttgacaaaatatggatttgtgaa |
131 |
Q |
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| T |
1625034 |
tatggtggttgataaaatttggatatgtgaa |
1625064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 151; Significance: 7e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 3 - 177
Target Start/End: Original strand, 40199024 - 40199198
Alignment:
| Q |
3 |
aatgataaggcacttgttagacacttatctgcatgtgaaacaatgggttctgctggttgtatttgcactgataaaactggaactttgaccacaaatcaaa |
102 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40199024 |
aatgagaaggcacttgttagacacttatctgcatgtgaaacaatgggttctgctggttgtatttgcactgataaaactggaactttgaccacaaatcaaa |
40199123 |
T |
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| Q |
103 |
tggttgttgacaaaatatggatttgtgaacaaactaagccgattaaaaccggaaatcgagatgatggtaatttat |
177 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||| | ||||||| |
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| T |
40199124 |
tggttgttgacaaaatatggatttgtgaacaaacgaagccgattaaaagcggaaatcgtgatgattgaaatttat |
40199198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 265 - 345
Target Start/End: Original strand, 40199197 - 40199277
Alignment:
| Q |
265 |
atggaaagaacaaggtgatgggaactccaacagaatcagcattgcttggatttggttagattttaggaggtgatactaagt |
345 |
Q |
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| T |
40199197 |
atggaaagaacaaggtgatgggaactccaacaaaatcagcattgcttggttttggtttgattttaagaggtgatactaagt |
40199277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 37757114 - 37757244
Alignment:
| Q |
1 |
tgaatgataaggcacttgttagacacttatctgcatgtgaaacaatgggttctgctggttgtatttgcactgataaaactggaactttgaccacaaatca |
100 |
Q |
| |
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||||||| | ||||||||| ||||| | ||||| ||||| || |||||||| ||| |||| |||||||| ||||| || || || || || || || || |
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| T |
37757114 |
tgaatgacatggcacttgtgagacatctttctgcttgtgagactatgggttcagctagttgcatttgcacagataagacagggacattaacaactaacca |
37757213 |
T |
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| Q |
101 |
aatggttgttgacaaaatatggatttgtgaa |
131 |
Q |
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||||| ||| ||||||||||||| |||||| |
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| T |
37757214 |
tatggtggttaacaaaatatggatatgtgaa |
37757244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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