View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15895_high_3 (Length: 637)
Name: NF15895_high_3
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15895_high_3 |
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| [»] scaffold0201 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 20 - 498
Target Start/End: Original strand, 23797570 - 23798033
Alignment:
| Q |
20 |
ctcgagccttattttctgtctttttaaccttcttggttgaagtctatataagataagatttgtttgttagacaattttatgaaaatt--aattaaagaag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || | ||||||||| |
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| T |
23797570 |
ctcgagccttattttctgtctttttaaccttcttggttgaagtctatataagataagatttgtttgttagacaattttattttatttgtagttaaagaag |
23797669 |
T |
|
| Q |
118 |
ttggaactttaatcattgatcggagagagggctagatttgattattaacattcttgcttcaaccacctttagaatctcatcaaattcttgtaactacagg |
217 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23797670 |
ttggaactttaatcattgatcggagagaggggtagatttgattattaacattcttgcttcaaccacctttagaatctcatcaaattcttgtaactacagt |
23797769 |
T |
|
| Q |
218 |
gtttgtaagattgtgagccattgtgtgtagggtcgtgcgattttccccaaatacataggatcgagttttagcaaacaaatgttggtagaagtttgacaat |
317 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23797770 |
gtatgtaagattgtgagccattgtgtgtagggtcgtgcgattttccccaaatacataggatcgagttctagcaaacaaatgttggtagaagtttgacaat |
23797869 |
T |
|
| Q |
318 |
ggatcaaatgttgaatgttgaacaacatacaagtgagagaacttatacacataatgcttagattttagataaagatgtagtgttgaa-nnnnnnnctgtg |
416 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
23797870 |
ggatcaaatgttgaatgttgaacaacatacaagtg---------------ataatgcttatgttttagataaagatgtagtgttgaatttttttcctgtg |
23797954 |
T |
|
| Q |
417 |
tgatttttcttacctaatgtgatgattcctcagctccatttatgacccaattacagttatatcaaagttaatggttcgatca |
498 |
Q |
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|| |||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
23797955 |
tggtttttcttacctaatgtgatgattcctcggctccatttatgacaca---acagttatatcaaagttaatggttcgatca |
23798033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 122; Significance: 3e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 502 - 631
Target Start/End: Complemental strand, 14444125 - 14443996
Alignment:
| Q |
502 |
tgtacaacttttctgtgcgtgcctttggaaaatctggttttttagaaatcaagctattttcaatcaagttgtttttgagcctaggatggttgctgcaagt |
601 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14444125 |
tgtacaacttttctgtgagtgcctttggaaaatctggttttttagaaatcaagctattttcaatcaagttgtttttgagcctaggatggttgctgcaagt |
14444026 |
T |
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| Q |
602 |
gctcatgattttgtctcggagtataatcta |
631 |
Q |
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| T |
14444025 |
gctcatgattttgtctcggagtttaatcta |
14443996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 118; Significance: 7e-60; HSPs: 1)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 506 - 631
Target Start/End: Complemental strand, 16985 - 16860
Alignment:
| Q |
506 |
caacttttctgtgcgtgcctttggaaaatctggttttttagaaatcaagctattttcaatcaagttgtttttgagcctaggatggttgctgcaagtgctc |
605 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16985 |
caacttttctgtgtgtgcctttggaaaatctggttttttagaaatcaagctattttcaatcaagttgtttttgagcctaggatggttgctgcaagtgctc |
16886 |
T |
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| Q |
606 |
atgattttgtctcggagtataatcta |
631 |
Q |
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|||||||||||||||||| ||||||| |
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| T |
16885 |
atgattttgtctcggagtttaatcta |
16860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 7e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 506 - 631
Target Start/End: Complemental strand, 29347441 - 29347316
Alignment:
| Q |
506 |
caacttttctgtgcgtgcctttggaaaatctggttttttagaaatcaagctattttcaatcaagttgtttttgagcctaggatggttgctgcaagtgctc |
605 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29347441 |
caacttttctgtgtgtgcctttggaaaatctggttttttagaaatcaagctattttcaatcaagttgtttttgagcctaggatggttgctgcaagtgctc |
29347342 |
T |
|
| Q |
606 |
atgattttgtctcggagtataatcta |
631 |
Q |
| |
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|||||||||||||||||| ||||||| |
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| T |
29347341 |
atgattttgtctcggagtttaatcta |
29347316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 1e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 502 - 623
Target Start/End: Complemental strand, 6468767 - 6468646
Alignment:
| Q |
502 |
tgtacaacttttctgtgcgtgcctttggaaaatctggttttttagaaatcaagctattttcaatcaagttgtttttgagcctaggatggttgctgcaagt |
601 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6468767 |
tgtacaacttttctgtgtgtgcctttggaaaatctggttttttaggaatcaagttattttcaatcaagttgtttttgagccaaggatggttgctgcaagt |
6468668 |
T |
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| Q |
602 |
gctcatgattttgtctcggagt |
623 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
6468667 |
gctcatgattttgtctcggagt |
6468646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 1e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 502 - 631
Target Start/End: Original strand, 35788470 - 35788599
Alignment:
| Q |
502 |
tgtacaacttttctgtgcgtgcctttggaaaatctggttttttagaaatcaagctattttcaatcaagttgtttttgagcctaggatggttgctgcaagt |
601 |
Q |
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||||||| ||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35788470 |
tgtacaaattttctgtgtgtgcctttggaaaatctgattttttaggaatcaagctattttcaatcaagttgtttttgagcctaggatggttgctgcaagt |
35788569 |
T |
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| Q |
602 |
gctcatgattttgtctcggagtataatcta |
631 |
Q |
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||||||||||||||| |||||| ||||||| |
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| T |
35788570 |
gctcatgattttgtcgcggagtttaatcta |
35788599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 6e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 515 - 631
Target Start/End: Complemental strand, 19501601 - 19501485
Alignment:
| Q |
515 |
tgtgcgtgcctttggaaaatctggttttttagaaatcaagctattttcaatcaagttgtttttgagcctaggatggttgctgcaagtgctcatgattttg |
614 |
Q |
| |
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|||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
19501601 |
tgtgtgtgcctttggaaaatctggttttttaggaatcaaactattttcaatcaagttgtttttgagcctaggatggttgctgcaagtgctcgtgaatttg |
19501502 |
T |
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| Q |
615 |
tctcggagtataatcta |
631 |
Q |
| |
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||||||||| ||||||| |
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| T |
19501501 |
tctcggagtttaatcta |
19501485 |
T |
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