View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15895_high_30 (Length: 342)
Name: NF15895_high_30
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15895_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 2 - 326
Target Start/End: Original strand, 18839232 - 18839556
Alignment:
| Q |
2 |
catgttagaagttagttagttttatagaacaaattgcatatgttaagaacataannnnnnnngtttcatgcttaggtatacaaataatgtacctagttct |
101 |
Q |
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| T |
18839232 |
catgttagaagtttgttagttttatagaacaaattgcatatgttaagaacataattttttttgcttcatgcttaggtatacaaataatgtacctagtttt |
18839331 |
T |
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| Q |
102 |
tgatgaaactaacaacataataatacctgaagattgcgccattgtgaatttttccagcggacaggatccaagtcactgatcccagtgattgtgcccatat |
201 |
Q |
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| T |
18839332 |
tgatgaaactaacaacataataatacctgaagattgcgccattgtgaatttttccagcggacaggatccaagtcactgatcccagtgattgtgcccatat |
18839431 |
T |
|
| Q |
202 |
atctgcgtactcctgaatcctctgtctcaaacatcattctgaatctcattccaagggaaacatgagtgtacagagctttattatacttggccaatggaat |
301 |
Q |
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| T |
18839432 |
atctgcgtactcctgaatcctctgtctcaaacatcattctgaatctcattccaagggaaacatgagtgtacagagctttattatacttggccaatggaat |
18839531 |
T |
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| Q |
302 |
cacaaattcacaggggctagtcctg |
326 |
Q |
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| T |
18839532 |
cacaaattcacaggggctagtcctg |
18839556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 119 - 319
Target Start/End: Complemental strand, 51799071 - 51798871
Alignment:
| Q |
119 |
taataatacctgaagattgcgccattgtgaatttttccagcggacaggatccaagtcactgatcccagtgattgtgcccatatatctgcgtactcctgaa |
218 |
Q |
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| T |
51799071 |
taataatacctgaagattgcgccattgtgaatttttccatcggacaggatccaagtcactaattcctgtaactgtacccatatatctacgtactccagac |
51798972 |
T |
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| Q |
219 |
tcctctgtctcaaacatcattctgaatctcattccaagggaaacatgagtgtacagagctttattatacttggccaatggaatcacaaattcacaggggc |
318 |
Q |
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| T |
51798971 |
tcctctgtttcaaacatcattctaaatctcattccaagagacacttgagtgtacatggctttgttatacttggccaatggaacaacaaattcggaggggc |
51798872 |
T |
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| Q |
319 |
t |
319 |
Q |
| |
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| T |
51798871 |
t |
51798871 |
T |
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