View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15895_high_32 (Length: 325)
Name: NF15895_high_32
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15895_high_32 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 41380026 - 41379720
Alignment:
| Q |
18 |
actagggcatcattgtcatcattcattctactttaaattgtgaataaataatgtttctaagagtgttaggtcgaaatagttgagtaacttaaatccatac |
117 |
Q |
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| T |
41380026 |
actagggcatcattgtcatcattcattctactttaaattgtgaataaacaatgtttctaagagtgttaggtcgaaatagttgagtaacttaaatccatac |
41379927 |
T |
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| Q |
118 |
ccgtcaggaataattgagaccaattttccgaatcgaataggtcaaatctgtgtttcagttgtgtaatagaatatattctctaattgattagcatttctag |
217 |
Q |
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| T |
41379926 |
tcttcaggaataattgagaccaattttccgaatcaaataggtcaaatatgtgtttcagttgtgtaatagaatatattctctaattgattagcatttctag |
41379827 |
T |
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| Q |
218 |
ttttgttggaaagccaaaagaaaaaactactacattgatagaaagagcctgaagctagttacaaatctaaaggcgtgtaatttttcaacaccggaattcg |
317 |
Q |
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| T |
41379826 |
ttttgttggaaagccaaaagaaaaaactactacattgatagaaagagcc-gaagctagttacaaatctaaaggcgtgtaatttttcaacaccggaaatcg |
41379728 |
T |
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| Q |
318 |
tctttcca |
325 |
Q |
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| T |
41379727 |
tctttcca |
41379720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 8034197 - 8034319
Alignment:
| Q |
20 |
tagggcatcattgtcatcattcattctactttaaattgtgaataaataatgtttctaagagtgttaggtcgaaatagttgagtaacttaaatccataccc |
119 |
Q |
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| T |
8034197 |
tagggcatcattgccatcattcattctactttaaattgtgaataaataatgtttctaagagtgtttggtcgaaatagttgagtaacttaaatccatacca |
8034296 |
T |
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| Q |
120 |
gtcaggaataattgagaccaatt |
142 |
Q |
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| T |
8034297 |
gttaggaataattgagatcaatt |
8034319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 7969580 - 7969520
Alignment:
| Q |
82 |
gttaggtcgaaatagttgagtaacttaaatccatacccgtcaggaataattgagaccaatt |
142 |
Q |
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| T |
7969580 |
gttaggtcgaaatagttgagtaacataaatccataccagttaggaataattgagatcaatt |
7969520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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