View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15895_high_36 (Length: 312)

Name: NF15895_high_36
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15895_high_36
NF15895_high_36
[»] chr2 (3 HSPs)
chr2 (14-149)||(32220355-32220490)
chr2 (149-221)||(32220843-32220915)
chr2 (182-221)||(32207654-32207693)
[»] chr7 (3 HSPs)
chr7 (14-83)||(11488742-11488811)
chr7 (21-96)||(13780403-13780479)
chr7 (14-83)||(13780316-13780386)
[»] chr8 (2 HSPs)
chr8 (21-83)||(19895361-19895423)
chr8 (14-83)||(19895274-19895344)
[»] chr6 (2 HSPs)
chr6 (21-83)||(32808476-32808538)
chr6 (21-96)||(24246530-24246606)
[»] chr1 (2 HSPs)
chr1 (21-96)||(541415-541491)
chr1 (14-83)||(541508-541578)


Alignment Details
Target: chr2 (Bit Score: 128; Significance: 4e-66; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 32220355 - 32220490
Alignment:
Q  14 aaattttacattgaaagctaaattgttgatattcattataaaatgattgactttggttagacatttatttgatttatactagaattctagtgtttatttg 113  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32220355 aaattttacattgaaagctaaattgttgatattcattacaaaatgattgactttggttagacatttatttgatttatactagaattctagtgtttatttg 32220454  T
Q  114 gtgtttggttaagattaaagtttgtatcatctataa 149  Q
    ||||||||||||||||||||||| ||||||||||||    
T  32220455 gtgtttggttaagattaaagtttttatcatctataa 32220490  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 32220843 - 32220915
Alignment:
Q  149 agccgtagttttagactgaaaatgttgtagtgccatgattgcgattgtgatttcagttttactgattaaatcg 221  Q
    |||||||||||||| |||||||||||||| || |||||||| |||||||||||||||||||||||||||||||    
T  32220843 agccgtagttttagtctgaaaatgttgtactggcatgattgtgattgtgatttcagttttactgattaaatcg 32220915  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 32207654 - 32207693
Alignment:
Q  182 catgattgcgattgtgatttcagttttactgattaaatcg 221  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  32207654 catgattgcgattgtgatttcagttttactgattaaatcg 32207693  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 11488811 - 11488742
Alignment:
Q  14 aaattttacattgaaagctaaattgttgatattcattataaaatgattgactttggttagacatttattt 83  Q
    |||||| |||||||| |||||||||||||||| ||||| |||||||||||||||| ||||||||||||||    
T  11488811 aaatttcacattgaaggctaaattgttgatatccattacaaaatgattgactttgattagacatttattt 11488742  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 13780403 - 13780479
Alignment:
Q  21 acattgaaagctaaattgttgatattcattataaaatgattgactttggttagacattta-tttgatttatactaga 96  Q
    |||||||| |||||||||||||||| ||||| ||||||||  |||||| ||||||||||| ||||||| ||||||||    
T  13780403 acattgaaggctaaattgttgatatccattacaaaatgatcaactttgattagacatttattttgattcatactaga 13780479  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 13780316 - 13780386
Alignment:
Q  14 aaattttacattgaaagctaaattgttgatattcattataaaat-gattgactttggttagacatttattt 83  Q
    |||||| |||||||| |||||||||| ||||||||| | ||||| |||| |||||||||||||||||||||    
T  13780316 aaatttcacattgaaggctaaattgtcgatattcatgacaaaattgattaactttggttagacatttattt 13780386  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 19895361 - 19895423
Alignment:
Q  21 acattgaaagctaaattgttgatattcattataaaatgattgactttggttagacatttattt 83  Q
    |||||||| ||||||||||||||||  |||| |||||||||||||||| ||||||||||||||    
T  19895361 acattgaaggctaaattgttgatatcgattacaaaatgattgactttgattagacatttattt 19895423  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 19895274 - 19895344
Alignment:
Q  14 aaattttacattgaaagctaaattgttgatattcattataaaat-gattgactttggttagacatttattt 83  Q
    |||||| |||||||| |||||||||| ||||||||| | ||||| |||| |||||||||||||||||||||    
T  19895274 aaatttcacattgaaggctaaattgtcgatattcataacaaaattgattaactttggttagacatttattt 19895344  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 32808538 - 32808476
Alignment:
Q  21 acattgaaagctaaattgttgatattcattataaaatgattgactttggttagacatttattt 83  Q
    |||||||| ||||||||| |||||| ||||| |||||||||||||||| ||||||||||||||    
T  32808538 acattgaaggctaaattgatgatatccattacaaaatgattgactttgattagacatttattt 32808476  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 24246530 - 24246606
Alignment:
Q  21 acattgaaagctaaattgttgatattcattataaaatgattgactttggttagacattta-tttgatttatactaga 96  Q
    |||||||| |||||||||||||||| ||||| ||||||||||||||||  ||| |||||| ||||||| ||||||||    
T  24246530 acattgaaggctaaattgttgatatccattacaaaatgattgactttgaataggcatttattttgattcatactaga 24246606  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 541491 - 541415
Alignment:
Q  21 acattgaaagctaaattgttgatattcattataaaatgattgactttggttagacattta-tttgatttatactaga 96  Q
    |||||||| |||||||||||||||||||||  |||||||||||||||  ||| ||||||| ||||||| ||||||||    
T  541491 acattgaaggctaaattgttgatattcatttcaaaatgattgactttaattatacatttattttgattcatactaga 541415  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 541578 - 541508
Alignment:
Q  14 aaattttacattgaaagctaaattgttgatattcattataaaat-gattgactttggttagacatttattt 83  Q
    |||||| |||||||| |||||||||| |||||| || | ||||| |||| |||||||||||||||||||||    
T  541578 aaatttcacattgaaggctaaattgtcgatattaatgacaaaattgattaactttggttagacatttattt 541508  T

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