View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15895_high_49 (Length: 265)
Name: NF15895_high_49
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15895_high_49 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 70 - 265
Target Start/End: Complemental strand, 20970469 - 20970273
Alignment:
| Q |
70 |
tattagaggaagaagaacaat-cagtcctgccattacttaagctacaagttattgcttgcactacaagtttcctcttttacttagtctaaataatgttgc |
168 |
Q |
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| T |
20970469 |
tattagaggaagaagaacaacacaatactgccattacttaagctacaagttattgcttgcactacaagtttcctcttttacttaatctaaataatgttgc |
20970370 |
T |
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| Q |
169 |
ttagcttgtaattaggcacattgtattttccttgatctctataaataacttatgtatcctcttattcatctatgagaaatgaagctattttgttcat |
265 |
Q |
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| T |
20970369 |
ttagcttgtaattaggcacattgtattttccttgatctctataaataacttatgtatcctcttattcatctatgacaaatgaagctattttgttcat |
20970273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 14 - 167
Target Start/End: Complemental strand, 20971775 - 20971621
Alignment:
| Q |
14 |
agagctcatgaagtcatacttgaagaagataaactaactagaaaaggtaaaatgattattagaggaagaagaacaat-cagtcctgccattacttaagct |
112 |
Q |
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| T |
20971775 |
agagctaatgaagtcttacttgaagaagataaactaactagaaaaggtaaaatgattattagaggaagaagaacaacacaatcctgccattacttaagct |
20971676 |
T |
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| Q |
113 |
acaagttattgcttgcactacaagtttcctcttttacttagtctaaataatgttg |
167 |
Q |
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| T |
20971675 |
acaagttattgcttgcactacaagtttcctcttttacttagtctaaataatgttg |
20971621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 201
Target Start/End: Original strand, 19697872 - 19697982
Alignment:
| Q |
91 |
cagtcctgccattacttaagctacaagttattgcttgcactacaagtttcctcttttacttagtctaaataatgttgcttagcttgtaattaggcacatt |
190 |
Q |
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| T |
19697872 |
cagttctgctattacttaagctgcaagctattacttgtattgcaagcttcttatcttacttaggcttaatcatgttgtttagcatgtaattaggcttatt |
19697971 |
T |
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| Q |
191 |
gtattttcctt |
201 |
Q |
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||| ||||||| |
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| T |
19697972 |
gtactttcctt |
19697982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 146 - 259
Target Start/End: Complemental strand, 26469173 - 26469060
Alignment:
| Q |
146 |
ttacttagtctaaataatgttgcttagcttgtaattaggcacattgtattttccttgatctctataaataacttatgtatcctcttattcatctatgaga |
245 |
Q |
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| T |
26469173 |
ttacttaggcttaatcatgttacttagcatgtaattaggctcattgtatttttcttctcccatataaatacctgatgtatcctcatttacatctatgaca |
26469074 |
T |
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| Q |
246 |
aatgaagctatttt |
259 |
Q |
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| T |
26469073 |
aatgaagctatttt |
26469060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 260
Target Start/End: Complemental strand, 26464487 - 26464372
Alignment:
| Q |
146 |
ttacttagtctaaataatgttgcttagcttgtaattaggcacattgtattttccttgatctctataaataacttatgtatcctcttattcatctatgaga |
245 |
Q |
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|||||||| || ||| ||||| |||||| ||||||||||| ||||||||||| ||| | |||||||| || |||||||||| | | ||||||||| | |
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| T |
26464487 |
ttacttaggcttaatcatgttacttagcatgtaattaggctcattgtatttttcttctaccatataaatacctgatgtatcctcatttacatctatgaca |
26464388 |
T |
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| Q |
246 |
aatg-aagctattttg |
260 |
Q |
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| T |
26464387 |
aatgaaagctattttg |
26464372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 260
Target Start/End: Complemental strand, 34005252 - 34005137
Alignment:
| Q |
146 |
ttacttagtctaaataatgttgcttagcttgtaattaggcacattgta-ttttccttgatctctataaataacttatgtatcctcttattcatctatgag |
244 |
Q |
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| T |
34005252 |
ttacttaggcttaatcatgttgcttagcatgtaattaggctcattgtatttttccttctttcatataaatacttgatgtatcctcatttacatctatgac |
34005153 |
T |
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| Q |
245 |
aaatgaagctattttg |
260 |
Q |
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| T |
34005152 |
aaatgaaactattttg |
34005137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 25035898 - 25035842
Alignment:
| Q |
14 |
agagctcatgaagtcatacttgaagaagataaactaactagaaaaggtaaaatgatt |
70 |
Q |
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| T |
25035898 |
agagctcatgaaatcttacttcaagaagataaaccaaataaaaaagggaaaatgatt |
25035842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 25049935 - 25049879
Alignment:
| Q |
14 |
agagctcatgaagtcatacttgaagaagataaactaactagaaaaggtaaaatgatt |
70 |
Q |
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| T |
25049935 |
agagctcatgaaatcttacttcaagaagataaaccaaataaaaaagggaaaatgatt |
25049879 |
T |
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