View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15895_high_5 (Length: 574)
Name: NF15895_high_5
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15895_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 8 - 560
Target Start/End: Original strand, 46581800 - 46582353
Alignment:
| Q |
8 |
cgaagaaaatagtatgacagtgattctattctggtgaagtaaatatgtgagaaattnnnnnnnnnntatcaaagaatacaaaattcttaaaccctttctc |
107 |
Q |
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| T |
46581800 |
cgaaaaaaatagtatgacagtgattctattctagtgaagtaaatatgtgagaaattaaaaaaaaaa-atcaaagaatacaaaattcttaaaccctttctc |
46581898 |
T |
|
| Q |
108 |
tttctaaagaaataagcaaagcagatatttctttatatctgctatataatataagtcgtcctttacaaagagaatttcagaatgagaatgtctcataaca |
207 |
Q |
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| T |
46581899 |
tttctaaagaaataagcaaagcagatatttctttatatctgctatataatataagtcatcctttacaacgagaatttcagaatgagaatgtctcataaca |
46581998 |
T |
|
| Q |
208 |
acatctcaccaagcatccaaataataataacatgcattcttctacactctcctacaatcttcattacaagtaattaaagtggtgccagtagtaattctgt |
307 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46581999 |
acatctcatcaagcatccaaataataataacatgcattcttttacactctcctacaatcttcattacaagtaattaaagtggtgccagtagtaattctgt |
46582098 |
T |
|
| Q |
308 |
ttaactccgcatcgcttattctccaactacttccttacattcaatctaacctaccaatccaaacaaccaactactaagaacttgttctagtttctgtaaa |
407 |
Q |
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|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46582099 |
ttaactccgcattgcttattatccaactacttccttacattcaatctaacctaccaatccaaacaaccaactactaagaacttgttctagtttctgtaaa |
46582198 |
T |
|
| Q |
408 |
aggaaacacaat-taat-gtcatcatcttcatcgtcgtcaatgccagtgtatcaacaacagcctcctccatttacagtgacacaaccatcctaccatggt |
505 |
Q |
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|||||||||||| | || || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
46582199 |
aggaaacacaatgtcatcatcttcatcttcatcgtcgtcaatgccagtgtatcaacaacagcctcctccgtttacagtgacacaaccatcctaccatggt |
46582298 |
T |
|
| Q |
506 |
gcatcacaacatgactccattggtcctctcattggagttctcgtagtgataattg |
560 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46582299 |
gcatcacaacatgactccattggtcctctcattggagttctcgtagtgataattg |
46582353 |
T |
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