View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15895_high_53 (Length: 249)
Name: NF15895_high_53
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15895_high_53 |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 14 - 209
Target Start/End: Complemental strand, 8736001 - 8735806
Alignment:
| Q |
14 |
atcaacaacacagaaacaattacttgcttcaaaagcatcgtaaaacatgaagtggattcgtgcacctatttgagaatataaagttcttgtttctaccctc |
113 |
Q |
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| T |
8736001 |
atcaacaacacagaaacaattacttgcttcaaaagcatcgtaaaacatgaagtggattcgtgcacctatttgagaatataaagttcttgtttctactctc |
8735902 |
T |
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| Q |
114 |
cctataaataaaccaagaccacggcaacctcttaattcaatcaaccatctcatgaacattggcagctttcccgttaaaatgaatatcgttaccttc |
209 |
Q |
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| T |
8735901 |
cctataaataaaccaagaccacgacaacagcttaattcgatcaaccatctcatgaacattggcagctttcccgttgaaatgaatatcgttaccttc |
8735806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 33 - 205
Target Start/End: Complemental strand, 8717122 - 8716950
Alignment:
| Q |
33 |
ttacttgcttcaaaagcatcgtaaaacatgaagtggattcgtgcacctatttgagaatataaagttcttgtttctaccctccctataaataaaccaagac |
132 |
Q |
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| T |
8717122 |
ttacttgcttcaaaagcatcgtaaaacatgaagtggatttgtccacctatttgagaagacaaagttcttgtttctacccgccctataaataaaccaagac |
8717023 |
T |
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| Q |
133 |
cacggcaacctcttaattcaatcaaccatctcatgaacattggcagctttcccgttaaaatgaatatcgttac |
205 |
Q |
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| T |
8717022 |
catgacaacagcttaattcgaccaaccatctcatgaacattgacatctttcccgttaaaaagaatatcgttac |
8716950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 8735780 - 8735743
Alignment:
| Q |
210 |
ggccaaattaaatgagtcacttttttaacccttctttc |
247 |
Q |
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| T |
8735780 |
ggccaaattaaatgagtcacttttttaacccttctttc |
8735743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 160
Target Start/End: Complemental strand, 72059 - 71965
Alignment:
| Q |
66 |
tggattcgtgcacctatttgagaatataaagttcttgtttctaccctccctataaataaaccaagaccacggcaacctcttaattcaatcaacca |
160 |
Q |
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| T |
72059 |
tggattcgtccacgtatttgagaagacaagattcttatttctaccgtctctgataataaaccaagaccatgacaaccacttaatacaatcaacca |
71965 |
T |
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