View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15895_high_57 (Length: 244)
Name: NF15895_high_57
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15895_high_57 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 39203812 - 39203583
Alignment:
| Q |
18 |
catataacatgattattttttgtttacaactactaaaaatgtttctactctcttatcatcctaatcctaattattattattctctaattatttgattgaa |
117 |
Q |
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| T |
39203812 |
catataacatgattattttttgtttacaacttctaaaaatgtttctactctcttatcatcctaatcctaattattattattctctaactatttgattgaa |
39203713 |
T |
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| Q |
118 |
agatcaaaaacccgagttagtttactttactaatagtaattaaatcaaagaatcgcatacacattacatcaaaaagctaaaacggcaccgtaccatt--- |
214 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39203712 |
agataaaaaacccgagttagtttactttactaatagtaattaaatcaaagaatcgcatacacattacatcaaaaagctaaaacggcaccgtaccatttac |
39203613 |
T |
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| Q |
215 |
tacaacaattcataaaactacaatctgaac |
244 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
39203612 |
tacaacaattcataaaactacaatctgaac |
39203583 |
T |
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