View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15895_high_59 (Length: 236)
Name: NF15895_high_59
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15895_high_59 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 8337174 - 8336952
Alignment:
| Q |
1 |
aaaacacttgaagttaattctacatataccttaactaactttcaagtggtcaagaatgatgtgttgtttaaagtttctgatcataagtacaagttaatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8337174 |
aaaacacttgaagttaattctacatataccttaactaactttcaagtgctcaagaatgatgtgttgtttaaagtttctgatcataagtacaagttaatat |
8337075 |
T |
|
| Q |
101 |
ggactggtggaacaactgctattgatgtcaacctcaatgacatccctaatacgcacatcaagtataagccttttgctgaaatagttttcggcaaatggcg |
200 |
Q |
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|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8337074 |
ggactggtggaacaactgctgttgatgtcaacctcaatgacatccctaatacgcacatcaagtataagccttttgctgaaatagttttcggaaaatggcg |
8336975 |
T |
|
| Q |
201 |
acctgacctattagttagtaagt |
223 |
Q |
| |
|
||||||||||||| ||||||||| |
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| T |
8336974 |
acctgacctattatttagtaagt |
8336952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 10234290 - 10234068
Alignment:
| Q |
1 |
aaaacacttgaagttaattctacatataccttaactaactttcaagtggtcaagaatgatgtgttgtttaaagtttctgatcataagtacaagttaatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10234290 |
aaaacacttgaagttaattctacatataccttaactaactttcatgtggtcaagaatgatgtgttgtttaaagtttctgatcataagtacaagttaatat |
10234191 |
T |
|
| Q |
101 |
ggactggtggaacaactgctattgatgtcaacctcaatgacatccctaatacgcacatcaagtataagccttttgctgaaatagttttcggcaaatggcg |
200 |
Q |
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|
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
10234190 |
ggactggtggaacaactgctgttgatgtcaacctcaatgacatctctaatacgcacatcaagtataagccttttgctgaaatagtttccagcaaatggcg |
10234091 |
T |
|
| Q |
201 |
acctgacctattagttagtaagt |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
10234090 |
acctgacctattagttagtaagt |
10234068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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