View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15895_high_7 (Length: 538)
Name: NF15895_high_7
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15895_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 1 - 531
Target Start/End: Original strand, 52546886 - 52547414
Alignment:
| Q |
1 |
tagagctaatggatcatttcctgctggtgtcctaaaagttgtctaatgacattgaagtacaaataatgattcagaatacattcagaggcaggtgatcaca |
100 |
Q |
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| T |
52546886 |
tagagctaatggatcatttcctgctggtgtcctaaaagctgtctaatgacattgaagtacaaataatgattcagaatacattcagaggcaggtgatcaca |
52546985 |
T |
|
| Q |
101 |
gatccatgtgacagaaataaaacatatgttgaaaatttaatcataccttgtaccatgtcaaaggttgtcttttagccaatgatggtccttgtacccattg |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52546986 |
gattcatgtgacagaaataaaacatatgttgaaaatttaatcataccttgtaccatgtcaaaggttgtcttttagccaatgatggtccttgtacccattg |
52547085 |
T |
|
| Q |
201 |
aactgatgaacttccacttacagtgggaagttttaaggtttcacccttgagaccaatctgaccagcaacaaaattgaaatggaatttcttaatgttgcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52547086 |
aactgatgaacttccacttacagtgggaagttttaaggtttcacccttgagaccaatctgaccagcaacaaaattgaaatggaatttcttaatgttgcat |
52547185 |
T |
|
| Q |
301 |
tatttccgaaaagcgaaatcacatataaaaatgaatgatacacatataatgcttcaacacaaaaataaacaagaaattatattatgcttaaacattttct |
400 |
Q |
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| T |
52547186 |
tatttccgaaaagcgaaatcacatataaaaatgaatgatacacatataatgcttcaacacaaaaataaacaagaaattatattatgcttaaacattttct |
52547285 |
T |
|
| Q |
401 |
tagtgatgacacaagtaagtatcaacaacatttttcgattttgaaaaacattgtgcaatgtttcttctaccaactgaaacattgctaggcaacaaacctt |
500 |
Q |
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| T |
52547286 |
tagtgatg--acaagtaagtatcaacaacatttttcgattttgaaaaacattgtgcaatgtttcttctaccaactgaaacattgctaggcaacaaacctt |
52547383 |
T |
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| Q |
501 |
gtaagaccatttctgttgtgacaagtctctg |
531 |
Q |
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| T |
52547384 |
gtaagaccatttctgttgtgacaagtctctg |
52547414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 5232788 - 5232740
Alignment:
| Q |
144 |
taccttgtaccatgtcaaaggttgtcttttagccaatgatggtccttgt |
192 |
Q |
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| T |
5232788 |
taccttgtaccatgtcaaaggttgttttttagccaatgatgatccttgt |
5232740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 127 - 260
Target Start/End: Complemental strand, 17128727 - 17128594
Alignment:
| Q |
127 |
tgttgaaaatttaatcataccttgtaccatgtcaaaggttgtcttttagccaatgatggtccttgtacccattgaactgatgaacttccacttacagtgg |
226 |
Q |
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||||||||| | | || ||||||||||||||||||||||||| |||||| || ||| ||||||| ||||| ||| || |||||||||||| || |
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| T |
17128727 |
tgttgaaaactcattcttaccttgtaccatgtcaaaggttgttttttagataaaaatgatccttgtgtccatttaacagaagaacttccacttgtggtat |
17128628 |
T |
|
| Q |
227 |
gaagttttaaggtttcacccttgagaccaatctg |
260 |
Q |
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|||| ||||||| |||||| || || |||||||| |
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| T |
17128627 |
gaaggtttaaggattcacctttcagtccaatctg |
17128594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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