View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15895_low_13 (Length: 472)
Name: NF15895_low_13
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15895_low_13 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 364
Target Start/End: Original strand, 107468 - 107815
Alignment:
| Q |
19 |
tttaagtcccttaaattcaattgaccgccttgattccatactatgacttgaatagaataatcaaccttctcattttgggtacaagcacgtcctctctttc |
118 |
Q |
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| T |
107468 |
tttaagtcccttaaaatcaattgattgccttgattccatactataacttgaatagaaaaatcaaccttctcattttggatacaagcacgtcctctctttt |
107567 |
T |
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| Q |
119 |
cttcaaccattatgatcatcatactcataccaccatctttgtcataaccttttgttcatccattcataccatccttatgtgaaaggcaagagcgtacctt |
218 |
Q |
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| T |
107568 |
cttcaaccattataagcatcatactcataccaccatctttgtcataaccttttgttcatccattcataccatccttttgtgaaaggcaagatcgtatctt |
107667 |
T |
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| Q |
219 |
attcttcc-ttgtgtcatttcaatcaaggccctaattgaaagctaattttcat--agagttacttcattccttccgagactcaaaaccaacctcttcatt |
315 |
Q |
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| T |
107668 |
attcttccattttgtcatttcaatcaaggccctaattgaaaactatttttcataaagagttacttcattccttacgacactc-aaaccaacctcttcatt |
107766 |
T |
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| Q |
316 |
tagtttcattttcgtggaacacctacaggtagcccttttcctattctat |
364 |
Q |
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| T |
107767 |
tagcttcattttcgtggaacacctagaggtagcacttttcctattctat |
107815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 140; Significance: 4e-73; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 189 - 340
Target Start/End: Original strand, 6308383 - 6308534
Alignment:
| Q |
189 |
atccttatgtgaaaggcaagagcgtaccttattcttccttgtgtcatttcaatcaaggccctaattgaaagctaattttcatagagttacttcattcctt |
288 |
Q |
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| T |
6308383 |
atccttatgtgaaaggcaagagcgtaccttattcttctttgtgtcatttcaatgaaggccctaattgaaagctaattttcatatagttacttcattcctt |
6308482 |
T |
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| Q |
289 |
ccgagactcaaaaccaacctcttcatttagtttcattttcgtggaacaccta |
340 |
Q |
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| T |
6308483 |
ccgagactcaaaaccaacctcttcatttagtttcattttcgtggaacaccta |
6308534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 6308235 - 6308382
Alignment:
| Q |
18 |
atttaagtcccttaaattcaattgaccgccttgattccatactatgacttgaatagaataatcaaccttctcattttgggtacaagcacgtcctctcttt |
117 |
Q |
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| T |
6308235 |
atttaagtcccttaaattcaattgattgccttgattccatactatgacttgaatagaaaaatcaaccttctcattttgggtacaagcacgtcctctcttt |
6308334 |
T |
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| Q |
118 |
ccttcaaccattatgatcatcatactcataccaccatctttgtcataa |
165 |
Q |
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| T |
6308335 |
ccttcaaccattatgatcatcatactcataccaccatctttgtcataa |
6308382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 463
Target Start/End: Original strand, 6308536 - 6308569
Alignment:
| Q |
430 |
agctccgagtccaaatccctttgcgaattttctt |
463 |
Q |
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| T |
6308536 |
agctctgagtccaaatccctttgcgaattttctt |
6308569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 29451287 - 29451386
Alignment:
| Q |
19 |
tttaagtcccttaaattcaattgaccgccttgattccatactatgacttgaatagaataatcaaccttctcattttgggtacaagcacgtcctctctttc |
118 |
Q |
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| T |
29451287 |
tttaagtcccttaaaatcaattggttgccttaactccatactatgactggaatagaagaatcaaccttctcaatttgggtctatgcacgtcctctctttc |
29451386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 429 - 463
Target Start/End: Original strand, 29451492 - 29451526
Alignment:
| Q |
429 |
aagctccgagtccaaatccctttgcgaattttctt |
463 |
Q |
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| T |
29451492 |
aagccccgagtccaaatccctttgcgaattttctt |
29451526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 262
Target Start/End: Complemental strand, 3280089 - 3279982
Alignment:
| Q |
156 |
tttgtcataaccttttgttcatccattcataccatccttatgtgaaaggcaagagcgtaccttattc-ttccttgtgtcatttcaatcaaggccctaatt |
254 |
Q |
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| T |
3280089 |
tttgccataacctcttgttcatccattcataccatgtttgagtgaaagggaagatcgtaggttattctttcattatgtcattccaatcaaggccctaatc |
3279990 |
T |
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| Q |
255 |
gaaagcta |
262 |
Q |
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| T |
3279989 |
gtaagcta |
3279982 |
T |
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