View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15895_low_14 (Length: 435)
Name: NF15895_low_14
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15895_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 19 - 415
Target Start/End: Complemental strand, 26284302 - 26283906
Alignment:
| Q |
19 |
cttgaatctcaattagcttaacagatagtgctgaaattgaaccaattaaactattataatccatatttgctgcttttttaacattggaaaattcagaact |
118 |
Q |
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| T |
26284302 |
cttgaatctcaattagcttaacagatagtgctgaaattgaaccaattaaactattataatccatatttgctgcttttttaacattggaaaattcagaact |
26284203 |
T |
|
| Q |
119 |
tattcctcctacaattgatagtcctaacattttgtattccctttcttttctttcatctgaaacaacatttgtttctaagttgccatacatgttgctgctt |
218 |
Q |
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| T |
26284202 |
tattcctcctacaattgatagtcctaacattttgtattccctttcttttctttcatctgaaacaacatttgtttctaagttgccatacatgttgctgctt |
26284103 |
T |
|
| Q |
219 |
ctgttttgactgatatttcgggttaggctgctattccggttaagaacggcacgttttccttcagaatggactacttcttcaactacaaagtgaagtaatg |
318 |
Q |
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| T |
26284102 |
ctgttttgactgatatttcgggttaggctgctattccggttaagaacggcacgttttccttcagattggactacttcttcaactacaaagtgaagtaatg |
26284003 |
T |
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| Q |
319 |
tggtttttccattgttgcttttgacatcattgagtttccttagtgaattcaagttaaacgcttgagcattacctctagaagttccatcattcattcg |
415 |
Q |
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| T |
26284002 |
tggtttttccattgttgcttttgacatcattgagtttccttagtgaattcaagttaaacgcttgagcattacctctagaagttccatcattcattcg |
26283906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 395
Target Start/End: Complemental strand, 15945685 - 15945545
Alignment:
| Q |
255 |
cggttaagaacggcacgttttccttcagaatggactacttcttcaactacaaagtgaagtaatgtggtttttccattgttgcttttgacatcattgagtt |
354 |
Q |
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||||||||||| || ||||||||||| ||| | |||||||||||||| ||||||||||| ||||| |||||||||| |||| || |||||| || | |
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| T |
15945685 |
cggttaagaaccgcgcgttttccttcggaacgaactacttcttcaacaacaaagtgaagcaatgtagtttttccatcagtgctcttaacatcagaaagct |
15945586 |
T |
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| Q |
355 |
tccttagtgaattcaagttaaacgcttgagcattacctcta |
395 |
Q |
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| T |
15945585 |
tccttaaagaaaccaagttgaaagcttgagcattgcctcta |
15945545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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