View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15895_low_15 (Length: 429)
Name: NF15895_low_15
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15895_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 9 - 415
Target Start/End: Complemental strand, 5382816 - 5382410
Alignment:
| Q |
9 |
agtgagatgaacagcttttctaccagttacaagctccaccagtaccaccccaaaggaataaacatcagctttttcagtgatttggccactttgagcatat |
108 |
Q |
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| T |
5382816 |
agtgagatcaacagcttttctaccagttacaagctccaccagtaccaccccaaatgaataaacatcagctttttcagtgatttggccactttgagcatat |
5382717 |
T |
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| Q |
109 |
tcaggagccaaatacctacacatacaatacaacagtttagttgcaatttaagaagcatgtatacaacatgtcgtagacatgttatacattattatatagg |
208 |
Q |
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| T |
5382716 |
tcaggagccaaatacctacacatacaatacaacagtttagttgcaatttaagaagcatgtatacaacatgtcacagacatgttatacattattatatagg |
5382617 |
T |
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| Q |
209 |
acatgtcacacttataatatagtacagaatactaatataacattaaaataaaaacacaaatcacatatccatatctgagatggttattatttaaaaaagt |
308 |
Q |
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| T |
5382616 |
acatgtcacacttataatatagtacagaatactaatataacattaaaataaaaacacaaatcacatatccatatctgagatggttattatttaaaaaagt |
5382517 |
T |
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| Q |
309 |
tccaaacataaaattttgaaaaatttaaatacaattagatgtatctaacacaatctgtaattgagatggttattattttgaagtgtctgcgcattcttgg |
408 |
Q |
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| T |
5382516 |
tccaaacataaaattttgaaaaatttaaatacaattagatgtatctaacacaatctgtaattgagatggttattattttgaagtgtctgcgcattcttgg |
5382417 |
T |
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| Q |
409 |
ttgtaat |
415 |
Q |
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| T |
5382416 |
ttgtaat |
5382410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 42743788 - 42743857
Alignment:
| Q |
57 |
cccaaaggaataaacatcagctttttcagtgatttggccactttgagcatattcaggagccaaataccta |
126 |
Q |
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| T |
42743788 |
cccaaatgagtacacatcagctttttcagtaatttgaccactttgagcatattctggtgccaaataccta |
42743857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 37 - 128
Target Start/End: Original strand, 43071255 - 43071346
Alignment:
| Q |
37 |
acaagctccaccagtaccaccccaaaggaataaacatcagctttttcagtgatttggccactttgagcatattcaggagccaaatacctaca |
128 |
Q |
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||||||||||| | |||||| |||||||||||||||||||| |||||||| ||||| |||||||||| |||||||||||||||||||||||| |
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| T |
43071255 |
acaagctccactaataccactccaaaggaataaacatcagccttttcagttatttgtccactttgagtatattcaggagccaaatacctaca |
43071346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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