View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15895_low_17 (Length: 411)
Name: NF15895_low_17
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15895_low_17 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 12 - 371
Target Start/End: Original strand, 28275467 - 28275827
Alignment:
| Q |
12 |
agattatactaaacaaaattaataatgacaatttcataatgaaattgagctcatatctatataaaa-attcatgtgaacctcccgcgtgcttgcatgcgc |
110 |
Q |
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| T |
28275467 |
agattatactaaacaaaattaataatgacaatttcataatggaattgagctcatatctatataaaaaattcatgtgaacctcccgcgtgcttgcatgcgc |
28275566 |
T |
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| Q |
111 |
gtttaaaatcatgtttttgtgtgtttgtgatttttcatatagacatatgcatgattaaccttaaggtaataatagtataaaaggaatacaaagtttcaaa |
210 |
Q |
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| T |
28275567 |
gtttaaaatcatgtttttgtgtgtttgtgatttttcatatagacatatgcatgattaaccttaaggtaataatagtataaaaggaatacaaagtttcaaa |
28275666 |
T |
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| Q |
211 |
ctgtctaatttaatcatgataatacacacaagggacagtattcaaggaatatactctaggatttattaaattattcttcagtcttctcaaatttttaggt |
310 |
Q |
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| T |
28275667 |
ctgtctaatttaatcatgataatacacacaagggacagtattcaaggaatatactctaggatttattaaattattcttcagtcttctctattttttaggt |
28275766 |
T |
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| Q |
311 |
tttggtctgcacatatttttaacattagtgaagctaaattaacttggtcaaactgatagta |
371 |
Q |
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| T |
28275767 |
tttggtctgcacatatttttaacattagtgaagctaaattaacttggtcaaactgatagta |
28275827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 67778 - 67715
Alignment:
| Q |
71 |
tataaaaattcatgtgaacctcccgcgtgcttgcatgcgcgtttaaaatcatgtttttgtgtgtt |
135 |
Q |
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| T |
67778 |
tataaaaattgaagtgaacctcctgcatgcttgcacgcgcgttt-aaagcatgttttcgtgtgtt |
67715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 40898506 - 40898569
Alignment:
| Q |
71 |
tataaaaattcatgtgaacctcccgcgtgcttgcatgcgcgtttaaaatcatgtttttgtgtgtt |
135 |
Q |
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| T |
40898506 |
tataaaaattgaagtgaacctcctgcatgcttgcacgcgcgttt-aaagcatgttttcgtgtgtt |
40898569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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