View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15895_low_19 (Length: 403)
Name: NF15895_low_19
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15895_low_19 |
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| [»] scaffold0037 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 15 - 390
Target Start/End: Original strand, 24031288 - 24031663
Alignment:
| Q |
15 |
atagggtgtatacttgtgcttgaagtttaatgcttctatttcaccaagtgtttggtattccttgtacttagttatttattttatgattgcattatctaat |
114 |
Q |
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| T |
24031288 |
atagggtgtatacttatgcttgaagtttaatgcttctatttcaccaagtgtttggtattccttgtacttagttatttattttatgattgcattatctaat |
24031387 |
T |
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| Q |
115 |
cctttattatgtgtatgtgcagtacaaacttaagtgtttgtttagctatttgtggtgaggcgattagttagatgctacgctgtgtatcttgctttaccta |
214 |
Q |
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| T |
24031388 |
cctttattatgtgtatgtgcagtacaaacttaagtgcttgtttagctatttgtggtgaggcgattagctagatgctacgctgtgtatcttgctttaccta |
24031487 |
T |
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| Q |
215 |
tcatatctttgggttgtaacacttatgtttcgatttgagtatttcaaactgtttaggacattgctaatatttatgtcttttggaacttaatatgattatg |
314 |
Q |
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| T |
24031488 |
tcatatttttgggttgtaacacttatgtttcgatttgagtatttcaaactgtttaggacattgctaatatttatgtcttttggaacttaatatgattatg |
24031587 |
T |
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| Q |
315 |
gattattatgtaagtgatgtacttttggagatctatatgtgatctatgatgtacttaatgtgtaagtgatgtactt |
390 |
Q |
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| T |
24031588 |
gattattatgtaagtgatgtacttttggagatctatatgtgatctatgatgtacttaatgtgtaagtgatgtactt |
24031663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 246 - 367
Target Start/End: Original strand, 14756 - 14877
Alignment:
| Q |
246 |
gatttgagtatttcaaactgtttaggacattgctaatatttatgtcttttggaacttaatatgattatggattattatgtaagtgatgtacttttggaga |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14756 |
gatttgagtatttcaaactgtttaggacattgctaatatttatgtcttttggaacttaatatgattatggattattatgtaagtgatgtacttttggaga |
14855 |
T |
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| Q |
346 |
tctatatgtgatctatgatgta |
367 |
Q |
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||||||| |||||||||||||| |
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| T |
14856 |
tctatatctgatctatgatgta |
14877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 246 - 367
Target Start/End: Complemental strand, 17038114 - 17037993
Alignment:
| Q |
246 |
gatttgagtatttcaaactgtttaggacattgctaatatttatgtcttttggaacttaatatgattatggattattatgtaagtgatgtacttttggaga |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17038114 |
gatttgagtatttcaaactgtttaggacattgctaatatttatgtcttttggaacttaatatgattatggattattatgtaagtgatgtacttttggaga |
17038015 |
T |
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| Q |
346 |
tctatatgtgatctatgatgta |
367 |
Q |
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||||||| |||||||||||||| |
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| T |
17038014 |
tctatatctgatctatgatgta |
17037993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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