View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15895_low_2 (Length: 639)
Name: NF15895_low_2
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15895_low_2 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0002 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 12 - 621
Target Start/End: Original strand, 340944 - 341540
Alignment:
| Q |
12 |
agagacaagaacttggttgtcagctaaggaacgagctcattacaactgagaagtttgtaacagttatttgtgggcacgacaaacttctgcagaataatag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
340944 |
agagacaagaacttggttgtcagctaaggaacgagctcattacaactgagaagtttgtaacagttatttgtgggcacgacaaacttctgcagaataatag |
341043 |
T |
|
| Q |
112 |
ggcattgaggaagttgattgaaaatagacttccttttctcaatcccttgaacatgttgcaggtagagatacttaagaggttaagacgtgatgacgataaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
341044 |
ggcattgaggaagttgattgaaaatagacttccttttctcaaccccttgaacatgttgcaggtagagatacttaagaggttaagacgtgatgacgataaa |
341143 |
T |
|
| Q |
212 |
cttaaagcaagagatgttctccttatcaccattaatggtattgctgccgggatgaggaacaccggataacttttcaacaactataattttcactcattca |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
341144 |
cttaaagcaagagatgttctccttatcaccattaatggtattgctgccgggatgaggaacaccggataacttttcaacaactataattttcactcattca |
341243 |
T |
|
| Q |
312 |
gtaaattgggtttcccattgttaggtaatttatgaccatttctgttatcaagcctgctaacgaatgattaatataggcatagccatcattttatgttctg |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
341244 |
gtaaattgggtttcccattgttaggtaatttatgaccatttctgttatcaagcctgctaatgaatgattaatataggcatagccatcattttatgttctg |
341343 |
T |
|
| Q |
412 |
tactatggacaagatgaataataatgatgtgacaaatttcattctggtgaagaagaataatgaaaagggaatatgaaacttaaattcgtttattaaatgt |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
341344 |
tactatggacaagatgaataataatgatgtgacagatttcattctggtgaagaagaata-------------atgaaacttaaattcgtttattaaatgt |
341430 |
T |
|
| Q |
512 |
tttcataaaaatgatttgatatttaataaaacaagagttgatgatgaaatgaaggggttgtgatcttgcaatcatatgcattacattatcgacgaatcat |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
341431 |
tttcataaaaatgatttgatatttaataaaacaagagttgatgatgaaatgaagaggttgtgatcttgcaatcatatgcattacattatcgacgaatcat |
341530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 12 - 281
Target Start/End: Complemental strand, 42188132 - 42187863
Alignment:
| Q |
12 |
agagacaagaacttggttgtcagctaaggaacgagctcattacaactgagaagtttgtaacagttatttgtgggcacgacaaacttctgcagaataatag |
111 |
Q |
| |
|
|||| |||||||| ||| || ||||||| ||||||||| | ||| |||| |||||||| || ||| |||||||||| ||||||| |||||||||||| |
|
|
| T |
42188132 |
agaggcaagaactcggtcgtgagctaagaaacgagctcctgacagctgaaaagtttgtgctcgtgattagtgggcacgagaaacttcagcagaataatag |
42188033 |
T |
|
| Q |
112 |
ggcattgaggaagttgattgaaaatagacttccttttctcaatcccttgaacatgttgcaggtagagatacttaagaggttaagacgtgatgacgataaa |
211 |
Q |
| |
|
| ||||||| |||| |||| || |||||||| |||||||||||| ||||| |||||||||| ||||| || |||||||| || ||||||||||| || |
|
|
| T |
42188032 |
gagcttgaggaggttggttgagaacagacttccatttctcaatcccatgaacctgttgcaggtggagattctgaagaggttgaggcgtgatgacgacaac |
42187933 |
T |
|
| Q |
212 |
cttaaagcaagagatgttctccttatcaccattaatggtattgctgccgggatgaggaacaccggataac |
281 |
Q |
| |
|
|||||| ||||||| | | |||||||| | ||||| |||||||| ||||||||||| ||||| |||| |
|
|
| T |
42187932 |
cttaaactcagagatgctttgcttatcactgtaaatgggattgctgctgggatgaggaataccggttaac |
42187863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University