View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15895_low_30 (Length: 343)

Name: NF15895_low_30
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15895_low_30
NF15895_low_30
[»] chr7 (15 HSPs)
chr7 (20-332)||(26192222-26192534)
chr7 (198-332)||(26180040-26180174)
chr7 (203-332)||(26278653-26278782)
chr7 (164-332)||(26121272-26121440)
chr7 (164-332)||(26129527-26129695)
chr7 (164-332)||(19102569-19102737)
chr7 (208-332)||(26243357-26243481)
chr7 (201-328)||(26156152-26156279)
chr7 (197-332)||(26251805-26251940)
chr7 (203-332)||(26298405-26298534)
chr7 (216-332)||(26204842-26204958)
chr7 (216-327)||(26224484-26224595)
chr7 (275-332)||(26302766-26302823)
chr7 (216-331)||(26260830-26260945)
chr7 (75-143)||(26252006-26252074)
[»] chr4 (2 HSPs)
chr4 (197-332)||(44904210-44904345)
chr4 (70-166)||(44904399-44904495)


Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 20 - 332
Target Start/End: Complemental strand, 26192534 - 26192222
Alignment:
Q  20 gaattaatacatattgttataaggcaaaccgaagtgcacaataattggatattgattcatcttattgaactccagataacagcaaaaagtagctggagag 119  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26192534 gaattaatacatattgttataaggcaaactgaagtgcacaataattggatattgattcatcttattgaactccagataacagcaaaaagtagctggagag 26192435  T
Q  120 aaaaacttggatgttgtttcatcatattcaaagccttaatcagctactccttcatttcaattctctagtctgccgagtcaccaagtgctttagatttctt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26192434 aaaaacttggatgttgtttcatcatattcaaagccttaatcagctactccttcatttcaattctctagtctgctgagtcaccaagtgctttagatttctt 26192335  T
Q  220 cagtgatttcagctcatcaatgaactgaatcaagttgttgtaagaatgtccaccttcctctatagtcctcttggaagcatcaccaagtttctttgctctc 319  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26192334 cagtgatttcagctcatcaatgaactgaatcaagttgttgtatgaatgtccaccttcctctatagtcctcttggaagcatcaccaagtttctttgctctc 26192235  T
Q  320 atcctcatttctt 332  Q
    |||||||||||||    
T  26192234 atcctcatttctt 26192222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 198 - 332
Target Start/End: Complemental strand, 26180174 - 26180040
Alignment:
Q  198 caccaagtgctttagatttcttcagtgatttcagctcatcaatgaactgaatcaagttgttgtaagaatgtccaccttcctctatagtcctcttggaagc 297  Q
    |||||||||| ||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  26180174 caccaagtgccttagatttctttaatgatttcagctcatcaatcaactgaatcaagttgttgtaagaatctccaccttcctcaatagtcctcttggaagc 26180075  T
Q  298 atcaccaagtttctttgctctcatcctcatttctt 332  Q
    |||||||||||||||||||||||||||||||||||    
T  26180074 atcaccaagtttctttgctctcatcctcatttctt 26180040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 203 - 332
Target Start/End: Complemental strand, 26278782 - 26278653
Alignment:
Q  203 agtgctttagatttcttcagtgatttcagctcatcaatgaactgaatcaagttgttgtaagaatgtccaccttcctctatagtcctcttggaagcatcac 302  Q
    ||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  26278782 agtgctttagatttcttcaatgatttcagctcatcaatcaattgaatcaagttgttgtaagagtgtccaccttcctctatagtcctcttggcagcatcac 26278683  T
Q  303 caagtttctttgctctcatcctcatttctt 332  Q
    ||||||||||||||||||||||||||||||    
T  26278682 caagtttctttgctctcatcctcatttctt 26278653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 164 - 332
Target Start/End: Complemental strand, 26121440 - 26121272
Alignment:
Q  164 tactccttcatttcaattctctagtctgccgagtcaccaagtgctttagatttcttcagtgatttcagctcatcaatgaactgaatcaagttgttgtaag 263  Q
    ||||||||||||| | || |||| |||||    ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  26121440 tactccttcatttgacttatctaatctgctttctcaccaagtgctttagatttcttcaatgatttcagctcatcaatcaactgaatcaagttgttgtaag 26121341  T
Q  264 aatgtccaccttcctctatagtcctcttggaagcatcaccaagtttctttgctctcatcctcatttctt 332  Q
    ||||||||| |||||||||| ||||||||| ||| |||||||||||||||||||||||| |||||||||    
T  26121340 aatgtccacgttcctctataatcctcttggcagcctcaccaagtttctttgctctcatcatcatttctt 26121272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 164 - 332
Target Start/End: Complemental strand, 26129695 - 26129527
Alignment:
Q  164 tactccttcatttcaattctctagtctgccgagtcaccaagtgctttagatttcttcagtgatttcagctcatcaatgaactgaatcaagttgttgtaag 263  Q
    ||||||||||||| | || |||| |||||    ||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||    
T  26129695 tactccttcatttgacttatctaatctgctttctcaccaagtgctttagatttcttcaatgatttcagctcatcaatcaattgaatcaagttgttgtaag 26129596  T
Q  264 aatgtccaccttcctctatagtcctcttggaagcatcaccaagtttctttgctctcatcctcatttctt 332  Q
    ||| |||||||||||| ||||||||||||| ||| |||||||| || ||||||||||||||||||||||    
T  26129595 aatctccaccttcctcaatagtcctcttggcagcctcaccaagcttttttgctctcatcctcatttctt 26129527  T

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Target: chr7; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 164 - 332
Target Start/End: Original strand, 19102569 - 19102737
Alignment:
Q  164 tactccttcatttcaattctctagtctgccgagtcaccaagtgctttagatttcttcagtgatttcagctcatcaatgaactgaatcaagttgttgtaag 263  Q
    ||||||||||||| |||| |||| |||||    ||||||||||  ||||||||||||| |||||||||||||||||| ||| ||||||||||||||| ||    
T  19102569 tactccttcatttgaattatctaatctgctttctcaccaagtgacttagatttcttcaatgatttcagctcatcaatcaacagaatcaagttgttgtgag 19102668  T
Q  264 aatgtccaccttcctctatagtcctcttggaagcatcaccaagtttctttgctctcatcctcatttctt 332  Q
    | |||||||| ||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||    
T  19102669 agtgtccaccctcctctatagtcctctttgcagcatcaccaagcttctttgctctcatcctcatttctt 19102737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 208 - 332
Target Start/End: Complemental strand, 26243481 - 26243357
Alignment:
Q  208 tttagatttcttcagtgatttcagctcatcaatgaactgaatcaagttgttgtaagaatgtccaccttcctctatagtcctcttggaagcatcaccaagt 307  Q
    ||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||| |||| |||||||||||||    
T  26243481 tttagatttcttcaacgatttcagctcatcaatcaactgaatcaagttgttgtaagaatctccaccctcctctatagtccttttggcagcatcaccaagt 26243382  T
Q  308 ttctttgctctcatcctcatttctt 332  Q
    |||||||||||||||||||||||||    
T  26243381 ttctttgctctcatcctcatttctt 26243357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 201 - 328
Target Start/End: Complemental strand, 26156279 - 26156152
Alignment:
Q  201 caagtgctttagatttcttcagtgatttcagctcatcaatgaactgaatcaagttgttgtaagaatgtccaccttcctctatagtcctcttggaagcatc 300  Q
    |||||| |||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||    
T  26156279 caagtggtttagatttcttcaatgatttcagatcatcaatcaactgaatcaagttgttgtaagaatctccaccttcttctatagtcctcttggcagcatc 26156180  T
Q  301 accaagtttctttgctctcatcctcatt 328  Q
    |||||||||||||||||||| |||||||    
T  26156179 accaagtttctttgctctcaccctcatt 26156152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 197 - 332
Target Start/End: Complemental strand, 26251940 - 26251805
Alignment:
Q  197 tcaccaagtgctttagatttcttcagtgatttcagctcatcaatgaactgaatcaagttgttgtaagaatgtccaccttcctctatagtcctcttggaag 296  Q
    |||||||| |||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||| ||||  |    
T  26251940 tcaccaagcgctttatatttcttcaatgatttcagctcatcaatcaactgaatcaagttgttgtaagaatctccaccttcctctatcgtccttttggctg 26251841  T
Q  297 catcaccaagtttctttgctctcatcctcatttctt 332  Q
    |||| |||||||||||||||||||||||||||||||    
T  26251840 catcgccaagtttctttgctctcatcctcatttctt 26251805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 203 - 332
Target Start/End: Complemental strand, 26298534 - 26298405
Alignment:
Q  203 agtgctttagatttcttcagtgatttcagctcatcaatgaactgaatcaagttgttgtaagaatgtccaccttcctctatagtcctcttggaagcatcac 302  Q
    ||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||| ||||||||| |||||||||||||||| ||| || |    
T  26298534 agtgctttagatttcttcaatgatttcagctcatcaatcaattgaatcaagttgttgtaagaatctccaccttcttctatagtcctcttggcagcctcgc 26298435  T
Q  303 caagtttctttgctctcatcctcatttctt 332  Q
     |||||||||||||||||||||||||||||    
T  26298434 taagtttctttgctctcatcctcatttctt 26298405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 216 - 332
Target Start/End: Complemental strand, 26204958 - 26204842
Alignment:
Q  216 tcttcagtgatttcagctcatcaatgaactgaatcaagttgttgtaagaatgtccaccttcctctatagtcctcttggaagcatcaccaagtttctttgc 315  Q
    |||||| |||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||| ||||||||    
T  26204958 tcttcaatgattttagctcatcaatcaactgaatcaagttgttgtaagaatctccaccttcctctatagtcttcttggcagcatcaccaagcttctttgc 26204859  T
Q  316 tctcatcctcatttctt 332  Q
    |||||||||||||||||    
T  26204858 tctcatcctcatttctt 26204842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 216 - 327
Target Start/End: Complemental strand, 26224595 - 26224484
Alignment:
Q  216 tcttcagtgatttcagctcatcaatgaactgaatcaagttgttgtaagaatgtccaccttcctctatagtcctcttggaagcatcaccaagtttctttgc 315  Q
    |||||| |||||| ||||||||||| || |||||||||||||||||||||| ||||||||||||||||||| |||| | |||||||||||| ||||||||    
T  26224595 tcttcaatgattttagctcatcaatcaattgaatcaagttgttgtaagaatctccaccttcctctatagtcttctttgcagcatcaccaagcttctttgc 26224496  T
Q  316 tctcatcctcat 327  Q
    ||||||||||||    
T  26224495 tctcatcctcat 26224484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 332
Target Start/End: Complemental strand, 26302823 - 26302766
Alignment:
Q  275 tcctctatagtcctcttggaagcatcaccaagtttctttgctctcatcctcatttctt 332  Q
    |||||||||||||||||||||||| ||||||| || || ||| || ||||||||||||    
T  26302823 tcctctatagtcctcttggaagcagcaccaagatttttagctttcttcctcatttctt 26302766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 331
Target Start/End: Complemental strand, 26260945 - 26260830
Alignment:
Q  216 tcttcagtgatttcagctcatcaatgaactgaatcaagttgttgtaagaatgtccaccttcctctatagtcctcttggaagcatcaccaagtttctttgc 315  Q
    |||||| |||||| |||||||| || || || ||||| |||||||||||   |||||| ||||||||  || |||| |  ||||||| ||||||  ||||    
T  26260945 tcttcaatgatttaagctcatctataaattgcatcaaattgttgtaagaggttccaccctcctctatgctcttcttagctgcatcacaaagttttcttgc 26260846  T
Q  316 tctcatcctcatttct 331  Q
    |||| |||||||||||    
T  26260845 tctcctcctcatttct 26260830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 143
Target Start/End: Complemental strand, 26252074 - 26252006
Alignment:
Q  75 ttcatcttattgaactccagataacagcaaaaagtagctggagagaaaaacttggatgttgtttcatca 143  Q
    |||||||||||||| | |||||| |||||| || ||||| |||| ||| | ||||||| ||||||||||    
T  26252074 ttcatcttattgaattacagatagcagcaagaaatagctagagaaaaataattggatggtgtttcatca 26252006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 197 - 332
Target Start/End: Complemental strand, 44904345 - 44904210
Alignment:
Q  197 tcaccaagtgctttagatttcttcagtgatttcagctcatcaatgaactgaatcaagttgttgtaagaatgtccaccttcctctatagtcctcttggaag 296  Q
    |||||||||||||| |||||||||| ||||||||||||||| || ||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||    
T  44904345 tcaccaagtgctttggatttcttcaatgatttcagctcatctatcaactgaaccaagttgttgtaagagtgtccaccttcctctatagtcctcttggcag 44904246  T
Q  297 catcaccaagtttctttgctctcatcctcatttctt 332  Q
    |||| ||||  || ||||||||| ||||||||||||    
T  44904245 catcgccaaacttttttgctctcgtcctcatttctt 44904210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 166
Target Start/End: Complemental strand, 44904495 - 44904399
Alignment:
Q  70 attgattcatcttattgaactccagataacagcaaaaagtagctggagagaaaaacttggatgttgtttcatcatattcaaagccttaatcagctac 166  Q
    |||| ||||||||||||||||||| || |||| ||||| || | ||||||||||| |||||| |||||| |||||||  |||||||| | |||||||    
T  44904495 attgtttcatcttattgaactccaaatcacagaaaaaaataaccggagagaaaaagttggatattgttttatcatatctaaagccttcaccagctac 44904399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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