View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15895_low_32 (Length: 327)
Name: NF15895_low_32
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15895_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 33750802 - 33750490
Alignment:
| Q |
1 |
ccataaacctcatcagttgttgaaaatcagtttccccaagcctatcccaaaaatcacaatccatattattcccaaatcccatatttgtctcactttgaat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
33750802 |
ccataaacctcatcagttgttgaaaatcagtttccccaagcctatcccaaaaatcacaatccatattattcccaaatccaatatttgtctcactttgcat |
33750703 |
T |
|
| Q |
101 |
ttcttgattcatattctcgttctcattctcat------cttttacattctctaaatcaggagcaaccacttctgactgcttaagtgaatcatcaaccatt |
194 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33750702 |
ttcttgattcatattctcgttctcattctcattctcatcttttacattctctaaatcaggagcaaccacttctgactgcttaagtgaatcatcaaccatt |
33750603 |
T |
|
| Q |
195 |
ggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgtggaaaatgttccgagccaaacac |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33750602 |
ggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgtggaaaatgttccgagccaaacac |
33750503 |
T |
|
| Q |
295 |
gggtggcacgtct |
307 |
Q |
| |
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||||||||||||| |
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| T |
33750502 |
gggtggcacgtct |
33750490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 171 - 295
Target Start/End: Complemental strand, 33719153 - 33719029
Alignment:
| Q |
171 |
tgcttaagtgaatcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccg |
270 |
Q |
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|||||||| || |||||||| | |||||||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33719153 |
tgcttaagggattcatcaacaagtggaaaattgagctttgccctcggcccacgaaactcgatggcggcattgtcataagctctggcagcttcctccgccg |
33719054 |
T |
|
| Q |
271 |
tggaaaatgttccgagccaaacacg |
295 |
Q |
| |
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||| ||| ||||||||||||||||| |
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| T |
33719053 |
tggtaaaggttccgagccaaacacg |
33719029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 173 - 296
Target Start/End: Complemental strand, 33735824 - 33735701
Alignment:
| Q |
173 |
cttaagtgaatcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgtg |
272 |
Q |
| |
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|||||| || |||||||| | |||||||||||| |||||||| |||||||||||||| || ||||||||||| ||||||||||||||||||||||||||| |
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| T |
33735824 |
cttaagcgattcatcaacgactggaaaattgagcttggcccttggcccacggaactcaatagcagcattgtcgtaagctctggcagcttcctccgccgtg |
33735725 |
T |
|
| Q |
273 |
gaaaatgttccgagccaaacacgg |
296 |
Q |
| |
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| ||| ||||| |||||||||||| |
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| T |
33735724 |
gtaaaggttccaagccaaacacgg |
33735701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 33735990 - 33735871
Alignment:
| Q |
1 |
ccataaacctcatcagttgttgaaaatcagtttccccaagcctatcccaaaaatcacaatccatattattcccaaatcccatatttgtctcactttgaat |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||| || | ||||||||||||||||||| | ||||| || ||||||||||| |||||||| |||| || |
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| T |
33735990 |
ccataaacctcattagttgttgaaaatcagcttctccgatactatcccaaaaatcacaattcttattactctcaaatcccatagttgtctcaatttgtat |
33735891 |
T |
|
| Q |
101 |
ttcttgattcatattctcgt |
120 |
Q |
| |
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|||||||||||||||||||| |
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| T |
33735890 |
ttcttgattcatattctcgt |
33735871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 172 - 295
Target Start/End: Complemental strand, 33721171 - 33721048
Alignment:
| Q |
172 |
gcttaagtgaatcatcaaccattggaaaattgagtttggccctcggcccacggaactcgatggcagcattgtcataagctctggcagcttcctccgccgt |
271 |
Q |
| |
|
||||||| || |||||||| | ||||||||| || ||||| |||||||| ||||||||||| || |||||||| |||||||| ||||||||||||||||| |
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| T |
33721171 |
gcttaagagattcatcaacaagtggaaaattaagcttggctctcggcccgcggaactcgatagcggcattgtcgtaagctctagcagcttcctccgccgt |
33721072 |
T |
|
| Q |
272 |
ggaaaatgttccgagccaaacacg |
295 |
Q |
| |
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|| ||| ||||| ||||||||||| |
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| T |
33721071 |
ggtaaaggttccaagccaaacacg |
33721048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 33719320 - 33719203
Alignment:
| Q |
1 |
ccataaacctcatcagttgttgaaaatcagtttccccaagcctatcccaaaaatcacaatccatattattcccaaatcccatatttgtctcactttgaat |
100 |
Q |
| |
|
|||||||| |||| | |||||||||||||| ||| |||| |||||| |||||||||||||| |||||||| |||| ||| | |||| ||| |||| || |
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| T |
33719320 |
ccataaacttcataaattgttgaaaatcaggttcaccaatgctatccaaaaaatcacaatccttattattctcaaaccccgtcattgtttcaatttgcat |
33719221 |
T |
|
| Q |
101 |
ttcttgattcatattctc |
118 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
33719220 |
ttcttgattcatattctc |
33719203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 33721324 - 33721214
Alignment:
| Q |
1 |
ccataaacctcatcagttgttgaaaatcagtttc---cccaagcctatcccaaaaatcacaatc---catattattcccaaatcccatatttgtctcact |
94 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||| ||||| ||||||||||||||||| || | ||||||||||||||||||| |||||||| | |
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| T |
33721324 |
ccataaacctcataagttgttgaaaatcagcttcttccccaatactatcccaaaaatcacattcagtcgtattattcccaaatcccatcgttgtctcaat |
33721225 |
T |
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| Q |
95 |
ttgaatttctt |
105 |
Q |
| |
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||| ||||||| |
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| T |
33721224 |
ttgcatttctt |
33721214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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