View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15895_low_34 (Length: 323)
Name: NF15895_low_34
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15895_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 16 - 318
Target Start/End: Complemental strand, 5012107 - 5011805
Alignment:
| Q |
16 |
ccttacccttctatctcttagtccttttattgtgtatactttgctatgtctatcttttgttccgaaggctctagacaccctcacaattctcggatctttt |
115 |
Q |
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| T |
5012107 |
ccttacccttctatctcttagtccttttattgtgtatactttgctatgtctatcttttgttccgaaggctctagacaccctcacaattctcggatccttt |
5012008 |
T |
|
| Q |
116 |
agttttaaccattgcgatgttgttgacgatgatgtagttgaatcattcgatggaagaacttcttgttttaatggaaattcggcttcttttggaatgttaa |
215 |
Q |
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| T |
5012007 |
agttttaaccattgcgatgttgttgacgatgatgtagttgaatcattcgatggaagaacttcttgttttaatggaaattcggcttcttttggaatgttaa |
5011908 |
T |
|
| Q |
216 |
tcatcttatttctctcattgttgttgttggtctccttccatggtaaaatgttgttgttttggttgaaattctctctaattttgaattttgcttcttctca |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
5011907 |
tcatcttatttctctcattgttgttgttggtctccttccatggtaaaatgttgttgttttggttgaaattctctctaattttgaattttgcttgttgtca |
5011808 |
T |
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| Q |
316 |
ctc |
318 |
Q |
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||| |
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| T |
5011807 |
ctc |
5011805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 4516280 - 4516182
Alignment:
| Q |
16 |
ccttacccttctatctcttagtccttttattgtgtatactttgctatgtctatcttttgttccgaaggctctagacaccctcacaattctcggatcttt |
114 |
Q |
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|||||| ||||||||||| | |||| |||||||| ||||||||||||||||||| ||| || || ||||| || || || |||||||| |||||||| |
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| T |
4516280 |
ccttactcttctatctctcaatcctcttattgtgcatactttgctatgtctatcctttccaccaaaagctcttgatactcttacaattcttggatcttt |
4516182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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