View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15895_low_35 (Length: 322)
Name: NF15895_low_35
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15895_low_35 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 13 - 303
Target Start/End: Original strand, 47717091 - 47717381
Alignment:
| Q |
13 |
aatatgctaatatctaatttttaaaatcaaaatacttataacaattggcttccatttttctttgccatctgtttcttttggaattactgcttctaggttt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
47717091 |
aatatgctaatatctaatttttaaaatcaaaatacttataactattggcttccatttttctttgccatctgtctcttttggaattactgcttctaggttg |
47717190 |
T |
|
| Q |
113 |
tctctatttgaatgcaaaactttgttaaccatcacaacttattattatgaagtaaattttatgtcgtcaaaattatcctgcattcataccacgacttaga |
212 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
47717191 |
tctctatttgaatgcaaaactctgttaaccatcacaacttattattatgaagtaaattttatgtcgtcaaaattatcctgcatccataccacgacttaga |
47717290 |
T |
|
| Q |
213 |
cagtctaacaaatttagaaaaggtcacataccttcgagatttatctttgccttccttttccttacgcatatgcaaatgaaaattagcaggg |
303 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47717291 |
cagtctaacaaatttaggaaaggtcacataccttcgagatttatctttgccttccttttccttacgcatatgcaaatgaaaattagcaggg |
47717381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 302
Target Start/End: Original strand, 47744887 - 47745170
Alignment:
| Q |
13 |
aatatgctaatatctaatttttaaaatcaaaatacttataacaattggcttccatttttctttgccatctgtttcttttggaattactgcttctaggttt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||| || || || |||||||||||||||||||| ||||| | |||| |||||||||| ||||||||| |
|
|
| T |
47744887 |
aatatgctaatatctaatttttaaaatcaaaca--ttgtacaaa--ggcttccatttttctttgccttctgtctatttttgaattactgcatctaggttt |
47744982 |
T |
|
| Q |
113 |
tctctatttgaatgcaaaactttgttaaccatcacaacttattattatgaagtaaattttatgtcgtcaaaattatcctgcattcataccacgacttaga |
212 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47744983 |
tctctttttgaatgcaaaactttgttaaccatcacaacttattattatgaagtagattttatgtcgtcaaaattatcctgcattcataccacgacttaga |
47745082 |
T |
|
| Q |
213 |
cagtctaacaaatttagaaaaggtcacataccttcgagatttatctttgccttccttttccttacgcatatgcaaatgaaaattagcagg |
302 |
Q |
| |
|
||| |||| |||||||| || ||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
47745083 |
cag--taacgaatttagacaaagtcacgtaccttggagatttatctttgccttccttttccttaagcatatgcaaatgaaaattagcagg |
47745170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 88 - 303
Target Start/End: Original strand, 47759276 - 47759497
Alignment:
| Q |
88 |
ttttggaattactgcttctaggttttctctatttgaatgcaaaactttgttaaccatcacaacttattattatgaagtaaattttatgtcgtcaa----- |
182 |
Q |
| |
|
|||| |||||||| | ||||| |||| | |||||||||||||||||||||||||||| |||||||| |||||||||||| |||||| ||||||| |
|
|
| T |
47759276 |
tttttgaattactacatctagttttttt-tatttgaatgcaaaactttgttaaccattacaacttaatattatgaagtagattttaaatcgtcaaaactc |
47759374 |
T |
|
| Q |
183 |
--aattatcctgcattcataccacgacttagacagtctaacaaatttagaaaaggtcacataccttcgagatttatctttgccttccttttccttacgca |
280 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||| |||||||| || |||||| |||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
47759375 |
aaaattatcctgagttcataccacgatttagacagtctactgaatttagacaaagtcacacaccttcgagatttatccttgccttccttttccttaagca |
47759474 |
T |
|
| Q |
281 |
tatgcaaatgaaaattagcaggg |
303 |
Q |
| |
|
||||||||| ||||||||||||| |
|
|
| T |
47759475 |
tatgcaaataaaaattagcaggg |
47759497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 13 - 184
Target Start/End: Original strand, 47712353 - 47712524
Alignment:
| Q |
13 |
aatatgctaatatctaatttttaaaatcaaaatacttataacaattggcttccatttttctttgccatctgtt-tcttttggaattactgcttctaggtt |
111 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||| || |||||| ||||||||||||| || | | || | |||| |||||| ||| |||||||| |
|
|
| T |
47712353 |
aatatgctaatatctaatttttaaaataaaaaaacttatgactattggcgtccatttttctttccctttttttctatttttgaattattgcatctaggtt |
47712452 |
T |
|
| Q |
112 |
ttctctatttgaatgcaaaactttgttaaccatcacaacttattat--tatgaagtaaattttatgtcgtcaaaa |
184 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||| |||||| |
|
|
| T |
47712453 |
ttctctatttgaatgcaaaa---tgttaaccatcacaacttattattatatgaagtagattttatgtcttcaaaa |
47712524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 95 - 202
Target Start/End: Original strand, 47713896 - 47714004
Alignment:
| Q |
95 |
attactgcttctaggttttctctatttgaatgcaaaactttgttaaccatcaca--acttattattatgaagtaaattttatgtcgtcaaaattat--cc |
190 |
Q |
| |
|
|||||||| |||||||||| | |||||||| |||| ||||||||| ||||||| |||||||||||||||| ||||||||||||||||| ||| || |
|
|
| T |
47713896 |
attactgcatctaggttttttatatttgaaagcaacgctttgttaatcatcacacaacttattattatgaag---attttatgtcgtcaaaactatagcc |
47713992 |
T |
|
| Q |
191 |
tgcattcatacc |
202 |
Q |
| |
|
|||||||||||| |
|
|
| T |
47713993 |
tgcattcatacc |
47714004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 303
Target Start/End: Original strand, 47712559 - 47712602
Alignment:
| Q |
260 |
tgccttccttttccttacgcatatgcaaatgaaaattagcaggg |
303 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
47712559 |
tgccttccttttccttaagcatatgcaaatgaaaattagcaggg |
47712602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University