View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15895_low_38 (Length: 308)
Name: NF15895_low_38
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15895_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 35072951 - 35072662
Alignment:
| Q |
1 |
aaattgtagcatttccaccatttcctccatcaaaaccgtgaagatcactatgatcaccactgctctggctttgcaactcactcgaagcaccaccatatcc |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35072951 |
aaatcgtagcatttccaccatttcctccatcaaaaccgtgaagatcactatgatcaccactgctctggctttgcaactcactcgaagcaccaccatatcc |
35072852 |
T |
|
| Q |
101 |
atttgaaacactcgcaagatcgagtttgacatttccttccccattttcaggattaccaaccctagcaaatctccgaagcccctttctggaataacacttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35072851 |
atttgaaacactcgcaagatcgagtttgacatttccttccccattttcaggattaccaaccctagcaaatctccgaagcccctttctggaataacacttc |
35072752 |
T |
|
| Q |
201 |
caagaaaaccatgnnnnnnnaacaacaaaacccacaacaataagcactattattataataatccaaactttcttcatcgaagcacctttt |
290 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35072751 |
caagaaaaccatgcccccccaacaacaaaacccacaacaataagcactattattataataatccaaactttcttcatcgaagcacctttt |
35072662 |
T |
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