View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15895_low_39 (Length: 308)
Name: NF15895_low_39
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15895_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 292
Target Start/End: Complemental strand, 1382710 - 1382439
Alignment:
| Q |
8 |
gagcagagaacatttcttttttcatctgcattcacaaaggaggtaaatatgtaggttttgtaacaaaatctcataaaagttctctaaatattcgtgtgat |
107 |
Q |
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| T |
1382710 |
gagcggagaacatttcttttttcatctacattcacaaaggaggtaaatatgtaggttttgtaacaaaatctcataaaagttctctaaatattcgtgtgat |
1382611 |
T |
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| Q |
108 |
ttcaggtccatacgatgctaagcgtctgtttaaggaatcctgtgaaggtacaaccttaattgtttacaaatattatcttcaaatctcctgcttgactcat |
207 |
Q |
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| T |
1382610 |
ttcaggtccatacgatgctaagcgtctgtttaaggaatcctgtgaaggtacaaccttaattg--------------cttcaaatctcctgcttgactcat |
1382525 |
T |
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| Q |
208 |
gttattcacaatataa-nnnnnnnnattttgtatagattgacctgtctaccaaatattctattgcggacacactgcagcagagttg |
292 |
Q |
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| T |
1382524 |
gttattcacaatataatttttttttattttgtatagattgacctgtctaccaaatattctattgcggacacactgcagcagagttg |
1382439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 145 - 292
Target Start/End: Complemental strand, 7317235 - 7317087
Alignment:
| Q |
145 |
tcctgtgaaggtacaaccttaattgtttacaaatattatcttcaaatctcctgcttgactcatgttattcacaa--tataannnnnnnnattttgtatag |
242 |
Q |
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| T |
7317235 |
tcctgtgaaggtacaaccttaat-gtttccaaatattatcttcaaatctcctgcttgactcatgttattcacaatatatatatatttttattctgtatag |
7317137 |
T |
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| Q |
243 |
attgacctgtctaccaaatattctattgcggacacactgcagcagagttg |
292 |
Q |
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| T |
7317136 |
attgacctatcttccaaatattctattgcggacacactgcagcagagttg |
7317087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 179
Target Start/End: Complemental strand, 7039628 - 7039552
Alignment:
| Q |
102 |
tgtgatttcaggtccatacgatgctaagcgtctgtttaaggaatcctgtgaaggtacaaccttaattgtttacaaata |
179 |
Q |
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| T |
7039628 |
tgtgatttcaggtcgatatgatccaaagtgtgtttttaaggaatcctgtgaaggtacaaccgtaa-tgtttacaaata |
7039552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 167
Target Start/End: Complemental strand, 20521817 - 20521784
Alignment:
| Q |
134 |
tgtttaaggaatcctgtgaaggtacaaccttaat |
167 |
Q |
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| T |
20521817 |
tgtttaaggaatcctgtgaaggtacaaccataat |
20521784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 29380978 - 29380921
Alignment:
| Q |
8 |
gagcagagaacatttcttttttcatctgcattcacaaaggaggtaaatatgtaggttt |
65 |
Q |
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| T |
29380978 |
gagcggagaacttttcttttttcatctacaatgacagagaaggtaaatatgtaggttt |
29380921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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