View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15895_low_4 (Length: 627)
Name: NF15895_low_4
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15895_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 38407739 - 38407389
Alignment:
| Q |
1 |
ggcagagatgtgggtgatttttggaatcaatgatttctattggagctgtacagctagttcttaatgaggttaaattgaactgtaggaatttgataaacat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38407739 |
ggcagagatgtgggtgatttttggaatcaacgatttctattggagctgtacagctagttcttaatgaggttaaattgaactgtaggaatttgataaacat |
38407640 |
T |
|
| Q |
101 |
tctcgcggaagtctctcaaacaggaaagcagcggcacataccatacagagattccagattgacatttgagatgtagtatgtaatccaccggtcatttgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
38407639 |
tctcgcggaagtctctcaaacaggaaagcagcggcacataccatacagagattccagattgacatttgaaatgtagcatgtaatccaccggtcatttgaa |
38407540 |
T |
|
| Q |
201 |
atgttttccctggtaatccttttgtattataattttttacaagacttggtattccggttgtaggagtgaaactttctgtacattgagatttgcacaacgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38407539 |
atgttttccctggtaatccttttgtattataattttttacaagacttggtattccgattgtaggagtgaaactttctgtacattgagatttgcacaacgt |
38407440 |
T |
|
| Q |
301 |
gccaaagccatcaagaacaaggcagttgttaatgaagttgcggcaggataa |
351 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38407439 |
gccaaagccatcaagaacaaggcagttgttaatgaagttgcggcaggataa |
38407389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 173 - 601
Target Start/End: Original strand, 38291972 - 38292400
Alignment:
| Q |
173 |
gtagtatgtaatccaccggtcatttgaaatgttttccctggtaatccttttgtattataattttttacaagacttggtattccggttgtaggagtgaaac |
272 |
Q |
| |
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||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||| ||| ||||||||| |||||||||||||||| |
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| T |
38291972 |
gtagtatgttatccaccagtcatttgaaatgttttcctcagtaatccttttgtattatgattttttacatgacctggtattccagttgtaggagtgaaac |
38292071 |
T |
|
| Q |
273 |
tttctgtacattgagatttgcacaacgtgccaaagccatcaagaacaaggcagttgttaatgaagttgcggcaggataatgtgatccacttgcgacaagt |
372 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||| ||||||||| ||||| |
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|
| T |
38292072 |
tttcagtacattgagatttgcacaacgtgccaaagccatcaagaacaaggcagttgttaacgaagttacg-caggataatgtgaaccacttgcggcaagt |
38292170 |
T |
|
| Q |
373 |
gatacaacaactaagg-tatattctcttccagtattctcagtcatgttttgatttagccattctatgaaaattgaaattcatttgaataactcggaagtg |
471 |
Q |
| |
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||||| ||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
38292171 |
gatacggcaactaagggtatattctattccagtattctcagtcatgttttgattttgccattctatgaaaattgaaattcatttgaacaactcagaagtg |
38292270 |
T |
|
| Q |
472 |
taagatatgaacaggatgaactgcatcaaattaaagaaaatggtgacaatccaatggatccaagtggaggtcattcagcagcttgggtccgaaaaagctt |
571 |
Q |
| |
|
||| |||| ||||||||||||||||| |||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38292271 |
taaaatatctacaggatgaactgcatcgaattaaagaaaatggttacaatccattggacccaagtggaggtcattcagcagcttgggtccgaaaaagctt |
38292370 |
T |
|
| Q |
572 |
gaacatattacagtttagccttaatagacc |
601 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |
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|
| T |
38292371 |
gaacatattacagtctagccttaatagacc |
38292400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 383 - 609
Target Start/End: Complemental strand, 38407369 - 38407143
Alignment:
| Q |
383 |
ctaaggtatattctcttccagtattctcagtcatgttttgatttagccattctatgaaaattgaaattcatttgaataactcggaagtgtaagatatgaa |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
38407369 |
ctaaggtatattctcttccagtattctcagtcatgttttgatttagccattctatgaaaattgaaattcatttgaataactcagaagtgtaagatatgaa |
38407270 |
T |
|
| Q |
483 |
caggatgaactgcatcaaattaaagaaaatggtgacaatccaatggatccaagtggaggtcattcagcagcttgggtccgaaaaagcttgaacatattac |
582 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38407269 |
caggatgaactgcatcaaattaaagaaaatgttgacaatccaatggatccaagtggaggtcattcagcagcttgggtccgaaaaagcttgaacatattac |
38407170 |
T |
|
| Q |
583 |
agtttagccttaatagaccgccatcat |
609 |
Q |
| |
|
|||||||||||||||||||| |||||| |
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|
| T |
38407169 |
agtttagccttaatagaccgtcatcat |
38407143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 8 - 167
Target Start/End: Original strand, 38291752 - 38291903
Alignment:
| Q |
8 |
atgtgggtgatttttggaatcaatgatttctattggagctgtacagctagttcttaatgaggttaaattgaactgtaggaatttgataaacattctcgcg |
107 |
Q |
| |
|
|||||||||||||||| ||||| |||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
38291752 |
atgtgggtgatttttgtaatcattgatctctattggagctg--------gttcttaccgaggttaaattgaactgtaggaatttgataaatattcttgcg |
38291843 |
T |
|
| Q |
108 |
gaagtctctcaaacaggaaagcagcggcacataccatacagagattccagattgacattt |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
38291844 |
gaagtctctcaaacaggaaagcagcggcacataccatatagagattccagattgacattt |
38291903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 235 - 338
Target Start/End: Complemental strand, 34942961 - 34942858
Alignment:
| Q |
235 |
ttttacaagacttggtattccggttgtaggagtgaaactttctgtacattgagatttgcacaacgtgccaaagccatcaagaacaaggcagttgttaatg |
334 |
Q |
| |
|
||||||| ||||| | ||| | |||||||||||||||| || |||||||||||||||||||||||| |||||| ||||||||||| || ||||| |||| |
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| T |
34942961 |
ttttacacgacttagcattgcagttgtaggagtgaaacatttagtacattgagatttgcacaacgtgtcaaagctatcaagaacaaagcggttgtaaatg |
34942862 |
T |
|
| Q |
335 |
aagt |
338 |
Q |
| |
|
|||| |
|
|
| T |
34942861 |
aagt |
34942858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 79 - 151
Target Start/End: Complemental strand, 34943182 - 34943110
Alignment:
| Q |
79 |
actgtaggaatttgataaacattctcgcggaagtctctcaaacaggaaagcagcggcacataccatacagaga |
151 |
Q |
| |
|
|||| |||||| |||| || ||||| || ||||| ||||| |||||||||||||| || |||||||||||||| |
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|
| T |
34943182 |
actgcaggaatctgattaatattcttgctgaagtttctcagacaggaaagcagcgacatataccatacagaga |
34943110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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