View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15895_low_43 (Length: 291)
Name: NF15895_low_43
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15895_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 28276465 - 28276208
Alignment:
| Q |
18 |
ataacgaatataaacaggtaagccaataaccctatgtagtatgtacctctaaccaagtcaatcaacagaggtggtgactttggctacataattgtcatcc |
117 |
Q |
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| T |
28276465 |
ataacgaatataaacaggtaagccaataaccctatgta---tgtacctctaaccaagtcaatcaacagaggtggtgactttggctacataattgtcatcc |
28276369 |
T |
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| Q |
118 |
tgaaaaataactaccatatattatcttcagcaacctctcctatagattgatctacatgtcctacatcgccaacattgatatatttagtatcctttaaaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
28276368 |
tgaaaaataactaccatatattatcttcagcaacctctcctatagattgatctacatgtcctacatcgtcaacattgatatatttagtatcctttaaaat |
28276269 |
T |
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| Q |
218 |
tgtaatagttgaagcatatggtctgccattgccagagagcaaagcccatatatccacaggt |
278 |
Q |
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||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28276268 |
tgtaacagttgaagcatatggtctgccattgccagagggcaaagcccatatatccacaggt |
28276208 |
T |
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