View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15895_low_49 (Length: 270)
Name: NF15895_low_49
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15895_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 38 - 181
Target Start/End: Original strand, 47763939 - 47764079
Alignment:
| Q |
38 |
aagaaatattaagaaatgaaacaaaatttgctctggagttttaaggtcagtcaactctagagtctaagannnnnnnacctttacaaatttccatctactc |
137 |
Q |
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| T |
47763939 |
aagaaatattaagaaatgaaacaaaatttgctctggagttttaaggtcagtcaactcaagagtctaagacccc---acctttacaaatttccatctactc |
47764035 |
T |
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| Q |
138 |
ttcattttcgatactccaaagaacaaacattaagcaatggctct |
181 |
Q |
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| T |
47764036 |
ttcattttcgatactccaaagaacaaacattaagcaatggctct |
47764079 |
T |
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Target: chr1; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 184 - 254
Target Start/End: Original strand, 47764406 - 47764476
Alignment:
| Q |
184 |
ttctatttctatgttctctgtttatgataattgtatcccaatccaaagccggagatcctgtatcatgtgat |
254 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
47764406 |
ttctatttctatgttctctgtttatgataattgtatcccaagccaaagccggagatcctgtatcatgtgat |
47764476 |
T |
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