View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15895_low_50 (Length: 267)
Name: NF15895_low_50
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15895_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 47058333 - 47058584
Alignment:
| Q |
1 |
tgagtccttttacttgtaaaagactgtagctaagtttttcccaacttagatatgctattgttattacccaattatacacaaaaatattagccaca--cac |
98 |
Q |
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| T |
47058333 |
tgagtccttttacttgtaaaagactgtagctaagtttttcccaacttagatatgctattgttattacccaattatacacaaaaatattagccacacacac |
47058432 |
T |
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| Q |
99 |
atgtatgatttactatgagtaaataccttagtacactacacaacgttaatcaagtccgtccctctgttaggatctattatcatatacatctcgtacattg |
198 |
Q |
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| T |
47058433 |
atgtatgatttactatgagtaaataccttagtacacgacacaatgttaatcaagtccgtccctctgttaggatctattatcatatacatctcgtacattg |
47058532 |
T |
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| Q |
199 |
ttcacttagtttcaaattcatattcaatattactaacttattatccaattat |
250 |
Q |
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| T |
47058533 |
ttcacttagtttcaaattcatattcaatattactaacttattatccaattat |
47058584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 243
Target Start/End: Complemental strand, 3458019 - 3457946
Alignment:
| Q |
170 |
atctattatcatatacatctcgtacattgttcacttagtttcaaattcatattcaatattactaacttattatc |
243 |
Q |
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| T |
3458019 |
atctaatatcaaatgcatctctgacattattcacttaatttcaaattcatcttcgatattaccaacttaatatc |
3457946 |
T |
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