View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15895_low_52 (Length: 260)

Name: NF15895_low_52
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15895_low_52
NF15895_low_52
[»] chr1 (11 HSPs)
chr1 (17-249)||(13162552-13162784)
chr1 (18-249)||(13130860-13131091)
chr1 (17-249)||(13095430-13095662)
chr1 (90-249)||(13214577-13214736)
chr1 (90-249)||(13008289-13008448)
chr1 (90-249)||(13102089-13102248)
chr1 (89-223)||(13005922-13006056)
chr1 (30-156)||(30367127-30367253)
chr1 (90-236)||(13205560-13205706)
chr1 (92-249)||(13069120-13069277)
chr1 (104-228)||(19278109-19278233)
[»] chr6 (2 HSPs)
chr6 (30-132)||(31376542-31376644)
chr6 (88-116)||(31385340-31385368)


Alignment Details
Target: chr1 (Bit Score: 181; Significance: 7e-98; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 13162552 - 13162784
Alignment:
Q  17 aattttgaccctttcccgtagttgccacaattcttctttgtgatgtagttcacgttcatttgatcagctagagcgataaagcttgtgtttgtgaaccagg 116  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||  ||||||||||| ||||||||||| ||| |||||||||||||||||||||||    
T  13162552 aattttgaccctttcgcgtagttgccaaaattcttctttgtgatgtatgtcacgttcattggatcagctagaccgacaaagcttgtgtttgtgaaccagg 13162651  T
Q  117 gcccttgatatcgaaaagttcctcgatgacgcttcaaaacaatggttgcataatcatggaaatcggagagatgacgcaaaaatgttggtagcataccaat 216  Q
    | |||||| ||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13162652 gtccttgaaatcgataagttcctccattacgcttcaaaacaatggttgcataatcatggaaatcggagagatgatgcaaaaatgttggtagcataccaat 13162751  T
Q  217 tattggccaattaattggtacaaattcatctct 249  Q
    |||||||||||||||||||||||||||||||||    
T  13162752 tattggccaattaattggtacaaattcatctct 13162784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 13130860 - 13131091
Alignment:
Q  18 attttgaccctttcccgtagttgccacaattcttctttgtgatgtagttcacgttcatttgatcagctagagcgataaagcttgtgtttgtgaaccaggg 117  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13130860 attttgaccctttcctgtagttgccacaattcttctttgtgatgtagttcacgttcatttgatcagctagagcgataaagcttgtgtttgtgaaccaggg 13130959  T
Q  118 cccttgatatcgaaaagttcctcgatgacgcttcaaaacaatggttgcataatcatggaaatcggagagatgacgcaaaaatgttggtagcataccaatt 217  Q
    ||||||| ||||| ||||||||| || |||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||  ||||| |||||||||    
T  13130960 cccttgaaatcgacaagttcctccataacgcttcaaaacaatggttgaataatcatggtaatcggagagatgacacaaaaatgacggtagtataccaatt 13131059  T
Q  218 attggccaattaattggtacaaattcatctct 249  Q
    ||||||||||||||| ||| || |||||||||    
T  13131060 attggccaattaattagtaaaagttcatctct 13131091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 13095430 - 13095662
Alignment:
Q  17 aattttgaccctttcccgtagttgccacaattcttctttgtgatgtagttcacgttcatttgatcagctagagcgataaagcttgtgtttgtgaaccagg 116  Q
    ||||||||||||||| |||||||||||  |||||||||||||||||||| |||||||||| ||||||||||| ||||||||||| |||  ||||||||||    
T  13095430 aattttgaccctttcgcgtagttgccaacattcttctttgtgatgtagtccacgttcattggatcagctagaccgataaagcttatgtcagtgaaccagg 13095529  T
Q  117 gcccttgatatcgaaaagttcctcgatgacgcttcaaaacaatggttgcataatcatggaaatcggagagatgacgcaaaaatgttggtagcataccaat 216  Q
    |||||| |  | |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||    
T  13095530 gccctttaattagaaaagttcctccatggcgcttcaaaacaatggttgcataatcatggaaatcggagagatgatgcaaaaatgccggtagcataccaat 13095629  T
Q  217 tattggccaattaattggtacaaattcatctct 249  Q
    |||||||||||||||||||||||||||||||||    
T  13095630 tattggccaattaattggtacaaattcatctct 13095662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 90 - 249
Target Start/End: Original strand, 13214577 - 13214736
Alignment:
Q  90 cgataaagcttgtgtttgtgaaccagggcccttgatatcgaaaagttcctcgatgacgcttcaaaacaatggttgcataatcatggaaatcggagagatg 189  Q
    |||||||||||||||||||||||||||  |  | | |||||||  |||||| |||| | |||||||| | ||||| |||||||||||||| ||| ||  |    
T  13214577 cgataaagcttgtgtttgtgaaccaggctcactcaaatcgaaacattcctccatgatgtttcaaaactaaggttgtataatcatggaaattggacagggg 13214676  T
Q  190 acgcaaaaatgttggtagcataccaattattggccaattaattggtacaaattcatctct 249  Q
    ||||||||  || |||||||||||||||||||||||||| |||||||||| |||||||||    
T  13214677 acgcaaaatcgtcggtagcataccaattattggccaattgattggtacaatttcatctct 13214736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 90 - 249
Target Start/End: Original strand, 13008289 - 13008448
Alignment:
Q  90 cgataaagcttgtgtttgtgaaccagggcccttgatatcgaaaagttcctcgatgacgcttcaaaacaatggttgcataatcatggaaatcggagagatg 189  Q
    ||||||||||||||||||||||||| |  |||| | ||||||| ||||||| |||| | |||||||  | ||||| || ||||||||||| ||| || ||    
T  13008289 cgataaagcttgtgtttgtgaaccaagctccttcaaatcgaaatgttcctccatgatgtttcaaaaataaggttgtatgatcatggaaattggacaggtg 13008388  T
Q  190 acgcaaaaatgttggtagcataccaattattggccaattaattggtacaaattcatctct 249  Q
    | ||||||     ||||||||||||||||||||||||||||||||| |||||||||||||    
T  13008389 atgcaaaatcccaggtagcataccaattattggccaattaattggtgcaaattcatctct 13008448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 90 - 249
Target Start/End: Original strand, 13102089 - 13102248
Alignment:
Q  90 cgataaagcttgtgtttgtgaaccagggcccttgatatcgaaaagttcctcgatgacgcttcaaaacaatggttgcataatcatggaaatcggagagatg 189  Q
    |||||||||  ||||||||||||||||  |||| | ||||||| ||||||| |||| | || ||||| | ||||| || ||||||||||| ||| || ||    
T  13102089 cgataaagccagtgtttgtgaaccaggctccttcaaatcgaaacgttcctccatgatgttttaaaactaaggttgtatgatcatggaaattggacaggtg 13102188  T
Q  190 acgcaaaaatgttggtagcataccaattattggccaattaattggtacaaattcatctct 249  Q
    ||||||||  | ||||||||||||||||||||||||||| ||||||| || |||||||||    
T  13102189 acgcaaaagcgctggtagcataccaattattggccaattgattggtaaaatttcatctct 13102248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 89 - 223
Target Start/End: Original strand, 13005922 - 13006056
Alignment:
Q  89 gcgataaagcttgtgtttgtgaaccagggcccttgatatcgaaaagttcctcgatgacgcttcaaaacaatggttgcataatcatggaaatcggagagat 188  Q
    |||||||||||||| |||||| | ||||||||||   ||||||||||||||| |||| |||| ||||||| ||||||||||||||| |||| ||| ||||    
T  13005922 gcgataaagcttgtatttgtgtatcagggcccttcgaatcgaaaagttcctccatgatgctttaaaacaaaggttgcataatcatgtaaattggatagat 13006021  T
Q  189 gacgcaaaaatgttggtagcataccaattattggc 223  Q
    ||| ||||||  | |||||||||||| ||| ||||    
T  13006022 gactcaaaaacctcggtagcataccatttactggc 13006056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 156
Target Start/End: Complemental strand, 30367253 - 30367127
Alignment:
Q  30 tcccgtagttgccacaattcttctttgtgatgtagttcacgttcatttgatcagctagagcgataaagcttgtgtttgtgaaccagggcccttgatatcg 129  Q
    |||||||||||||| |||||||  ||| ||||| ||| ||||||||| |||||||   |||||||||||||||||||||||| ||||| |||| | ||||    
T  30367253 tcccgtagttgccaaaattcttgcttgcgatgtggttaacgttcattggatcagcagtagcgataaagcttgtgtttgtgaatcagggtccttcaaatcg 30367154  T
Q  130 aaaagttcctcgatgacgcttcaaaac 156  Q
    ||| ||||||| |||||  ||||||||    
T  30367153 aaacgttcctccatgacatttcaaaac 30367127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 90 - 236
Target Start/End: Original strand, 13205560 - 13205706
Alignment:
Q  90 cgataaagcttgtgtttgtgaaccagggcccttgatatcgaaaagttcctcgatgacgcttcaaaacaatggttgcataatcatggaaatcggagagatg 189  Q
    |||||||||||||||||||||||||||  |||| | ||||||| ||||||| || ||| |||||||  | ||||  |||||||||||| | | | |  ||    
T  13205560 cgataaagcttgtgtttgtgaaccaggctccttcaaatcgaaatgttcctccattacgtttcaaaattaaggttagataatcatggaatttgaataagtg 13205659  T
Q  190 acgcaaaaatgttggtagcataccaattattggccaattaattggta 236  Q
    ||||||||  |  ||||||||||||||||||||| ||||||||||||    
T  13205660 acgcaaaagcgacggtagcataccaattattggcaaattaattggta 13205706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 92 - 249
Target Start/End: Complemental strand, 13069277 - 13069120
Alignment:
Q  92 ataaagcttgtgtttgtgaaccagggcccttgatatcgaaaagttcctcgatgacgcttcaaaacaatggttgcataatcatggaaatcggagagatgac 191  Q
    |||||||||||||||||||||||||  |||  | ||| ||| ||||||| |||| | |||||||  | |||||||  ||||||||||| ||| || | ||    
T  13069277 ataaagcttgtgtttgtgaaccaggctcctccaaatctaaacgttcctccatgatgtttcaaaattaaggttgcacgatcatggaaattggacaggttac 13069178  T
Q  192 gcaaaaatgttggtagcataccaattattggccaattaattggtacaaattcatctct 249  Q
     || ||  |   |||||||||||| |||||||||||||||||||||||||||||||||    
T  13069177 acataagcgccagtagcataccaaatattggccaattaattggtacaaattcatctct 13069120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 228
Target Start/End: Complemental strand, 19278233 - 19278109
Alignment:
Q  104 tttgtgaaccagggcccttgatatcgaaaagttcctcgatgacgcttcaaaacaatggttgcataatcatggaaatcggagagatgacgcaaaaatgttg 203  Q
    ||||||||||| || |||| | |  ||||||| |||| |||| | |||||||| | ||||||||||||||| |  | ||| || | | |||||| || ||    
T  19278233 tttgtgaaccaaggtcctttaaactgaaaagtacctccatgatgtttcaaaactaaggttgcataatcatgaatcttggataggttatgcaaaactgatg 19278134  T
Q  204 gtagcataccaattattggccaatt 228  Q
    ||||||| |||||||||||||||||    
T  19278133 gtagcatgccaattattggccaatt 19278109  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 132
Target Start/End: Original strand, 31376542 - 31376644
Alignment:
Q  30 tcccgtagttgccacaattcttctttgtgatgtagttcacgttcatttgatcagctagagcgataaagcttgtgtttgtgaaccagggcccttgatatcg 129  Q
    |||||||||||||| |||||||  ||| ||||| ||| ||||| ||| |||||||    ||||||||||||||||||||||||||||| |||| | ||||    
T  31376542 tcccgtagttgccaaaattcttgcttgcgatgtggttaacgttaattggatcagcagtggcgataaagcttgtgtttgtgaaccagggtccttcaaatcg 31376641  T
Q  130 aaa 132  Q
    |||    
T  31376642 aaa 31376644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 116
Target Start/End: Complemental strand, 31385368 - 31385340
Alignment:
Q  88 agcgataaagcttgtgtttgtgaaccagg 116  Q
    |||||||||||||||||||||||||||||    
T  31385368 agcgataaagcttgtgtttgtgaaccagg 31385340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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