View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15895_low_6 (Length: 565)

Name: NF15895_low_6
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15895_low_6
NF15895_low_6
[»] chr4 (5 HSPs)
chr4 (11-440)||(40011666-40012095)
chr4 (484-546)||(40012141-40012203)
chr4 (350-404)||(31053044-31053098)
chr4 (286-331)||(27763470-27763515)
chr4 (352-404)||(10355239-10355291)
[»] scaffold0245 (1 HSPs)
scaffold0245 (287-400)||(5659-5773)
[»] scaffold0229 (1 HSPs)
scaffold0229 (287-400)||(5989-6103)
[»] chr1 (5 HSPs)
chr1 (287-400)||(1279981-1280095)
chr1 (334-409)||(48252402-48252478)
chr1 (353-409)||(35120168-35120224)
chr1 (350-409)||(28016578-28016637)
chr1 (276-329)||(35120172-35120225)
[»] chr3 (3 HSPs)
chr3 (312-411)||(2973050-2973150)
chr3 (350-403)||(35970437-35970490)
chr3 (350-415)||(50888527-50888592)
[»] chr2 (4 HSPs)
chr2 (275-409)||(1465734-1465869)
chr2 (277-317)||(13292789-13292829)
chr2 (352-402)||(13056660-13056710)
chr2 (350-402)||(1465743-1465795)
[»] chr5 (2 HSPs)
chr5 (348-409)||(17358519-17358580)
chr5 (350-433)||(11649039-11649122)
[»] chr7 (3 HSPs)
chr7 (350-402)||(45429318-45429370)
chr7 (352-403)||(7465266-7465317)
chr7 (350-403)||(18358792-18358845)
[»] chr8 (1 HSPs)
chr8 (354-404)||(25487649-25487699)
[»] chr6 (2 HSPs)
chr6 (276-328)||(3245827-3245879)
chr6 (277-329)||(8514159-8514211)


Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 11 - 440
Target Start/End: Original strand, 40011666 - 40012095
Alignment:
Q  11 gagcacagaggagacaaacttaagagggagagtttgattgagttgaaggaaatgtttcgtgagagaaaaatggatgaattgaaatgggtttttgaggatg 110  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40011666 gagcacagaggagagaaacttaagagggagagtttgattgagttgaaggaaatgtttcgtgagagaaaaatggatgaattgaaatgggtttttgaggatg 40011765  T
Q  111 atattgaaattaacgaggtttggttcgatgaaaataacaatgggaaaaggaaaaagacgagtaagcgaagtgaggttcaggttgtgaggtttcttgttga 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40011766 atattgaaattaacgaggtttggttcgatgaaaataacaatgggaaaaggaaaaagacgagtaagcgaagtgaggttcaggttgtgaggtttcttgttga 40011865  T
Q  211 taggtttgcgttctgtttttcatttgctgtcaattcttttgggagttagttagtatgcattgctggtgtaaaattattttacacattcatccaatgacgt 310  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  40011866 taggtttgtgttctgtttttcatttgctgtcaattcttttgggagttagttagaatgcattgttggtgtaaaattattttacacattcatccaatgacgt 40011965  T
Q  311 attgtcatatcatttaatatcgttgaaaaaacatgagtatcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttacaa 410  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40011966 attgtcatatcatttaatgtggttgaaaaaacatgagtatcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttacaa 40012065  T
Q  411 tgttagtttacgaaaattaaacttgattga 440  Q
    ||||||||||||||||||||||||||||||    
T  40012066 tgttagtttacgaaaattaaacttgattga 40012095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 484 - 546
Target Start/End: Original strand, 40012141 - 40012203
Alignment:
Q  484 gtaggttgtgtgataaggaaattggggctaaggattggaaattttcgaggttgatgaagctgt 546  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  40012141 gtaggttgtgtgataaggaaattagggctaaggattggaaattttcgaggttgatgaagctgt 40012203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 350 - 404
Target Start/End: Original strand, 31053044 - 31053098
Alignment:
Q  350 tcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataatt 404  Q
    ||||||||||||||||||  |  ||||||||||||  ||||||||||||||||||    
T  31053044 tcatattcattaattgacgcgacaacacatcattggatgcatgtgtaaaataatt 31053098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 27763470 - 27763515
Alignment:
Q  286 attttacacattcatccaatgacgtattgtcatatcatttaatatc 331  Q
    ||||||||||| ||| ||| |||||||||||| |||||||||||||    
T  27763470 attttacacatgcattcaacgacgtattgtcacatcatttaatatc 27763515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 352 - 404
Target Start/End: Complemental strand, 10355291 - 10355239
Alignment:
Q  352 atattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataatt 404  Q
    |||||||||||||||||||  || |||| ||||| ||||| ||||||||||||    
T  10355291 atattcattaattgacatgacaaaacatgattgaatgcatatgtaaaataatt 10355239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 287 - 400
Target Start/End: Complemental strand, 5773 - 5659
Alignment:
Q  287 ttttacacattcatccaatgacgtattgtcatatcatttaatatcgttgaaaaaacatgagta-tcatat-tcattaattgacatggaaacacatcattg 384  Q
    |||||||||| |||||||||| ||||||||| ||||||||||  |||| |||| |||||| |  |||||  |||||||||||| ||| ||||||||||||    
T  5773 ttttacacatgcatccaatgatgtattgtcacatcatttaatg-cgttaaaaacacatgacttgtcatacctcattaattgacgtggcaacacatcattg 5675  T
Q  385 agtgcatgtgtaaaat 400  Q
     |||||||||||||||    
T  5674 ggtgcatgtgtaaaat 5659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 287 - 400
Target Start/End: Complemental strand, 6103 - 5989
Alignment:
Q  287 ttttacacattcatccaatgacgtattgtcatatcatttaatatcgttgaaaaaacatgagta-tcatat-tcattaattgacatggaaacacatcattg 384  Q
    |||||||||| |||||||||| ||||||||| ||||||||||  |||| |||| |||||| |  |||||  |||||||||||| ||| ||||||||||||    
T  6103 ttttacacatgcatccaatgatgtattgtcacatcatttaatg-cgttaaaaacacatgacttgtcatacctcattaattgacgtggcaacacatcattg 6005  T
Q  385 agtgcatgtgtaaaat 400  Q
     |||||||||||||||    
T  6004 ggtgcatgtgtaaaat 5989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 287 - 400
Target Start/End: Complemental strand, 1280095 - 1279981
Alignment:
Q  287 ttttacacattcatccaatgacgtattgtcatatcatttaatatcgttgaaaaaacatgagta-tcatat-tcattaattgacatggaaacacatcattg 384  Q
    |||||||||| |||||||||| ||||||||| ||||||||||  |||| |||| |||||| |  |||||  |||||||||||| ||| ||||||||||||    
T  1280095 ttttacacatgcatccaatgatgtattgtcacatcatttaatg-cgttaaaaacacatgacttgtcatacctcattaattgacgtggcaacacatcattg 1279997  T
Q  385 agtgcatgtgtaaaat 400  Q
     |||||||||||||||    
T  1279996 ggtgcatgtgtaaaat 1279981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 409
Target Start/End: Complemental strand, 48252478 - 48252402
Alignment:
Q  334 tgaaaaaacatgagt-atcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttaca 409  Q
    |||||| |||||||| |||||||| |||||||||  ||||||||||||||||| || ||||||||||| ||| ||||    
T  48252478 tgaaaatacatgagttatcatatttattaattgatgtggaaacacatcattgaatgtatgtgtaaaattattgtaca 48252402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 409
Target Start/End: Original strand, 35120168 - 35120224
Alignment:
Q  353 tattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttaca 409  Q
    |||| |||||||||||||| || |||||||||  |||||||||||||||| ||||||    
T  35120168 tatttattaattgacatggcaatacatcattggatgcatgtgtaaaataactttaca 35120224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 409
Target Start/End: Complemental strand, 28016637 - 28016578
Alignment:
Q  350 tcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttaca 409  Q
    |||||||| |||||||| |||  ||||||||||||| || ||||||||||||||| ||||    
T  28016637 tcatattcgttaattgaaatgacaacacatcattgaatgtatgtgtaaaataattgtaca 28016578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 329
Target Start/End: Complemental strand, 35120225 - 35120172
Alignment:
Q  276 gtgtaaaattattttacacattcatccaatgacgtattgtcatatcatttaata 329  Q
    ||||||| ||||||||||||| |||||||||| |||||| ||| ||| ||||||    
T  35120225 gtgtaaagttattttacacatgcatccaatgatgtattgccatgtcaattaata 35120172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 411
Target Start/End: Complemental strand, 2973150 - 2973050
Alignment:
Q  312 ttgtcatatcatttaatatcgttgaaaaaacatgagta-tcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttacaa 410  Q
    |||||| |||||||||||| |||||||| |||||| |  ||||||||||| |||||| || ||||| || ||| | ||||  ||||||||||||||||||    
T  2973150 ttgtcacatcatttaatatggttgaaaatacatgatttgtcatattcattgattgacgtgaaaacatattattaaatgcaaatgtaaaataattttacaa 2973051  T
Q  411 t 411  Q
    |    
T  2973050 t 2973050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 350 - 403
Target Start/End: Complemental strand, 35970490 - 35970437
Alignment:
Q  350 tcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataat 403  Q
    |||||||||||||||||| ||  ||||||| ||||| |||||||||||||||||    
T  35970490 tcatattcattaattgacgtgacaacacatgattgaatgcatgtgtaaaataat 35970437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 415
Target Start/End: Complemental strand, 50888592 - 50888527
Alignment:
Q  350 tcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttacaatgtta 415  Q
    |||||||||||||||||| | | || ||||||||   | ||||||||||||||||||||| |||||    
T  50888592 tcatattcattaattgacgttgtaagacatcatttgatacatgtgtaaaataattttacattgtta 50888527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 275 - 409
Target Start/End: Original strand, 1465734 - 1465869
Alignment:
Q  275 ggtgtaaaattattttacacattcatccaatgacgtattgtcatatcatttaatatcgttgaaaaaacatgagta-tcatattcattaattgacatggaa 373  Q
    |||||| | ||||||||||||| |||||||||| || ||||||  ||| ||||||    |||||| ||| ||||  ||||||| || || |||  |||||    
T  1465734 ggtgtacagttattttacacatgcatccaatgatgtgttgtcacgtcaattaataaatatgaaaacacacgagttgtcatattgatcaaatgatgtggaa 1465833  T
Q  374 acacatcattgagtgcatgtgtaaaataattttaca 409  Q
    |||||||||||  |||||||||||||||||| ||||    
T  1465834 acacatcattggatgcatgtgtaaaataattgtaca 1465869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 317
Target Start/End: Original strand, 13292789 - 13292829
Alignment:
Q  277 tgtaaaattattttacacattcatccaatgacgtattgtca 317  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  13292789 tgtaaaattattttacacattcattcaatgatgtattgtca 13292829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 352 - 402
Target Start/End: Original strand, 13056660 - 13056710
Alignment:
Q  352 atattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataa 402  Q
    ||||||||| |||||  ||| ||||||||||||| ||||||||||||||||    
T  13056660 atattcattcattgatgtggcaacacatcattgaatgcatgtgtaaaataa 13056710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 350 - 402
Target Start/End: Complemental strand, 1465795 - 1465743
Alignment:
Q  350 tcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataa 402  Q
    ||||||| |||||||||| ||  ||||||||||||  ||||||||||||||||    
T  1465795 tcatatttattaattgacgtgacaacacatcattggatgcatgtgtaaaataa 1465743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 348 - 409
Target Start/End: Complemental strand, 17358580 - 17358519
Alignment:
Q  348 tatcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttaca 409  Q
    |||||| |||||||||||||||| | ||||||||| |  |||||||||||||||| ||||||    
T  17358580 tatcatcttcattaattgacatgaagacacatcatagtatgcatgtgtaaaataactttaca 17358519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 433
Target Start/End: Complemental strand, 11649122 - 11649039
Alignment:
Q  350 tcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttacaatgttagtttacgaaaattaaact 433  Q
    ||||||||||||||||| |||  ||||||||||||  ||||||| |||||||| ||||||  ||| || ||  |||||||||||    
T  11649122 tcatattcattaattgagatgtcaacacatcattgtatgcatgtataaaataactttacatagttggtgtataaaaattaaact 11649039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 45429318 - 45429370
Alignment:
Q  350 tcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataa 402  Q
    |||||||||||||||||||||| |||| ||||||   ||||||||||||||||    
T  45429318 tcatattcattaattgacatggcaacaaatcatttgatgcatgtgtaaaataa 45429370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 403
Target Start/End: Complemental strand, 7465317 - 7465266
Alignment:
Q  352 atattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataat 403  Q
    ||||||||||||||||||  |||||||| ||||| | |||||||||||||||    
T  7465317 atattcattaattgacataaaaacacataattgaatccatgtgtaaaataat 7465266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 403
Target Start/End: Complemental strand, 18358845 - 18358792
Alignment:
Q  350 tcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataat 403  Q
    |||||||||||||||||||||  |||||||||||   |||||||| ||||||||    
T  18358845 tcatattcattaattgacatgacaacacatcatttgatgcatgtgcaaaataat 18358792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 404
Target Start/End: Original strand, 25487649 - 25487699
Alignment:
Q  354 attcattaattgacatggaaacacatcattgagtgcatgtgtaaaataatt 404  Q
    |||||||||||||| ||| ||||||||||||| |  |||||||||||||||    
T  25487649 attcattaattgacgtggcaacacatcattgaatatatgtgtaaaataatt 25487699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 328
Target Start/End: Complemental strand, 3245879 - 3245827
Alignment:
Q  276 gtgtaaaattattttacacattcatccaatgacgtattgtcatatcatttaat 328  Q
    ||||||| ||||||||| |||  || ||||||||||||||||||||| |||||    
T  3245879 gtgtaaacttattttactcatatattcaatgacgtattgtcatatcaattaat 3245827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 277 - 329
Target Start/End: Complemental strand, 8514211 - 8514159
Alignment:
Q  277 tgtaaaattattttacacattcatccaatgacgtattgtcatatcatttaata 329  Q
    |||| ||||||||||||||| ||| |||||| ||||||||| |||| ||||||    
T  8514211 tgtataattattttacacatacatgcaatgatgtattgtcacatcaattaata 8514159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University