View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15895_low_60 (Length: 241)
Name: NF15895_low_60
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15895_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 44186869 - 44187081
Alignment:
| Q |
18 |
agtaatacaccatgctctatgataggatagatatttggtgaaaaagaacatgtagatccttattaaataaaatatacaaaagatttaaatttattatctg |
117 |
Q |
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| T |
44186869 |
agtaatacactatgctctataataggatagatatttggtgaaaaagaacatgtagatccttattaaataaaatatacaaaagatttaaatttattatctg |
44186968 |
T |
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| Q |
118 |
ttgataactgcgcaatttgaaggataagatacatgtatgtcatgaatttgactattataccccaaatcgcaattaacaagtgcgatagagtaaatcgata |
217 |
Q |
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| T |
44186969 |
ttgataactgcgcaattttaaggataagatacatgtatgtcatgaatttgactattataccccaaatcgcaattaacacgtgcgatagagtaaatcgata |
44187068 |
T |
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| Q |
218 |
agtggaattctct |
230 |
Q |
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| T |
44187069 |
attggaattctct |
44187081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 32 - 233
Target Start/End: Original strand, 1328029 - 1328224
Alignment:
| Q |
32 |
ctctatgataggatagatatttggtgaaaaagaacatgtagatccttattaaataaaatatacaaaagatttaaatttattatctgttgataactgcgca |
131 |
Q |
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| T |
1328029 |
ctctgtgagaggatagatatttggtgaaaaagagcatgtagatccttattaaataaaataaacagaacatttaaatttattat-------taactgcaca |
1328121 |
T |
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| Q |
132 |
atttgaaggataaga-tacatgtatgtcatgaatttgactattataccccaaatcgcaattaacaagtgcgatagagtaaatcgataagtggaattctct |
230 |
Q |
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| T |
1328122 |
agtttaaggataagagtacatgtatgtcatggattagactattacaccgcaaatcacaattaacacgtgtgatagagtagaccgataattggaattcttt |
1328221 |
T |
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