View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15895_low_62 (Length: 235)
Name: NF15895_low_62
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15895_low_62 |
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Alignment Details
Target: chr3 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 87 - 220
Target Start/End: Original strand, 41139286 - 41139418
Alignment:
| Q |
87 |
ttgaagtaatgattcagcatctattgtagccattgatacccatttctttgatttttaaggatgaaatgtacatgagtcttccttttttcaaagccaagaa |
186 |
Q |
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| T |
41139286 |
ttgaagtaatgattcagcatctattgtagtcattgatacccatttccttgatttttaaggatgaaatgtacatgagtcttcc-tttttcaaagccaagaa |
41139384 |
T |
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| Q |
187 |
ttttgagatcatgtaccataaccataacagttct |
220 |
Q |
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| T |
41139385 |
ttttgagatcatgtaccataaccataacagttct |
41139418 |
T |
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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 41139224 - 41139266
Alignment:
| Q |
27 |
taatagggtccttgttacctatcctatttagacgaaaacacac |
69 |
Q |
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| T |
41139224 |
taatagggtccttgttacctatcctatttagacgaaaacacac |
41139266 |
T |
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