View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15895_low_67 (Length: 208)

Name: NF15895_low_67
Description: NF15895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15895_low_67
NF15895_low_67
[»] chr8 (5 HSPs)
chr8 (14-190)||(40109799-40109976)
chr8 (18-82)||(39890690-39890754)
chr8 (17-82)||(44648516-44648580)
chr8 (18-75)||(1875582-1875639)
chr8 (17-57)||(34948695-34948735)
[»] chr4 (5 HSPs)
chr4 (18-75)||(34360724-34360781)
chr4 (17-57)||(2158013-2158053)
chr4 (17-61)||(3689630-3689674)
chr4 (17-57)||(7061677-7061717)
chr4 (17-57)||(36985854-36985894)
[»] chr1 (6 HSPs)
chr1 (10-101)||(2981827-2981918)
chr1 (23-61)||(26257946-26257984)
chr1 (18-75)||(12039151-12039208)
chr1 (18-75)||(28749060-28749117)
chr1 (18-75)||(39864180-39864237)
chr1 (17-57)||(31042865-31042905)
[»] chr6 (4 HSPs)
chr6 (21-79)||(1225119-1225177)
chr6 (17-61)||(21804531-21804575)
chr6 (21-92)||(7920310-7920381)
chr6 (18-51)||(181625-181658)
[»] chr2 (4 HSPs)
chr2 (17-75)||(16805949-16806007)
chr2 (17-75)||(16845230-16845288)
chr2 (19-75)||(5789635-5789691)
chr2 (22-75)||(17695403-17695456)
[»] chr7 (7 HSPs)
chr7 (18-75)||(12631381-12631438)
chr7 (18-56)||(34100562-34100600)
chr7 (14-56)||(44180277-44180319)
chr7 (18-75)||(7463289-7463346)
chr7 (17-61)||(22738776-22738820)
chr7 (21-61)||(34947579-34947619)
chr7 (17-57)||(47045468-47045507)
[»] scaffold0159 (1 HSPs)
scaffold0159 (19-75)||(34008-34064)
[»] chr5 (7 HSPs)
chr5 (19-75)||(8698379-8698435)
chr5 (21-75)||(8724996-8725050)
chr5 (17-75)||(15439306-15439364)
chr5 (21-75)||(37184066-37184120)
chr5 (21-57)||(30512690-30512726)
chr5 (21-57)||(30553030-30553066)
chr5 (21-61)||(31655125-31655165)
[»] chr3 (6 HSPs)
chr3 (17-75)||(30190649-30190707)
chr3 (18-75)||(14194624-14194681)
chr3 (22-75)||(33491072-33491125)
chr3 (18-75)||(43253852-43253909)
chr3 (7-75)||(38795402-38795470)
chr3 (21-57)||(42278737-42278773)


Alignment Details
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 40109799 - 40109976
Alignment:
Q  14 attatactaattttactattgaaatcaattcaattaatcatttctttagaaaccgtgcacaactctaaatcgaatattaaaataagattcaataaagtcc 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40109799 attatactaattttactattgaaatcaattcaattaatcatttctttaaaaaccgtgcacaactctaaatcgaatattaaaataagattcaataaagtcc 40109898  T
Q  114 cttgttgtaatatgttatatg-aaaataaaaaacgtattcattagacatttacaaattattttatttatgtttaatgt 190  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  40109899 cttgttgtaatatgttatatgaaaaaaaaaaaacgtattcattagacatttacaaatcattttatttatgtttaatgt 40109976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 39890690 - 39890754
Alignment:
Q  18 tactaattttactattgaaatcaattcaattaatcatttctttagaaaccgtgcacaactctaaa 82  Q
    ||||||||||| ||||||| |||| |||| |||||||||||||| ||| || |||||||||||||    
T  39890690 tactaattttattattgaagtcaactcaactaatcatttctttaaaaatcgcgcacaactctaaa 39890754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 44648580 - 44648516
Alignment:
Q  17 atactaattttactattgaaatcaattcaattaatcatttctttagaaaccgtgcacaactctaaa 82  Q
    ||||||||||||| ||||||||||| | || ||||||||| |||| |||||||| |||||||||||    
T  44648580 atactaattttaccattgaaatcaactaaactaatcattt-tttaaaaaccgtgtacaactctaaa 44648516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 1875639 - 1875582
Alignment:
Q  18 tactaattttactattgaaatcaattcaattaatcatttctttagaaaccgtgcacaa 75  Q
    |||||||||||| |||||||||||  |||||||||||||| |||  || |||||||||    
T  1875639 tactaattttaccattgaaatcaacacaattaatcatttccttaataatcgtgcacaa 1875582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 34948735 - 34948695
Alignment:
Q  17 atactaattttactattgaaatcaattcaattaatcatttc 57  Q
    ||||||||||||||||| |||||||  ||||||||||||||    
T  34948735 atactaattttactatttaaatcaacacaattaatcatttc 34948695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 34360724 - 34360781
Alignment:
Q  18 tactaattttactattgaaatcaattcaattaatcatttctttagaaaccgtgcacaa 75  Q
    |||||||||||| |||||||||||| ||||||||||||||||||  || |||||||||    
T  34360724 tactaattttaccattgaaatcaatacaattaatcatttctttaataatcgtgcacaa 34360781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 2158053 - 2158013
Alignment:
Q  17 atactaattttactattgaaatcaattcaattaatcatttc 57  Q
    ||||||||||||  |||||||||||||||||||||| ||||    
T  2158053 atactaattttatcattgaaatcaattcaattaatcgtttc 2158013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 3689630 - 3689674
Alignment:
Q  17 atactaattttactattgaaatcaattcaattaatcatttcttta 61  Q
    ||||||||||||| ||  |||||||| ||||||||||||||||||    
T  3689630 atactaattttaccatcaaaatcaatacaattaatcatttcttta 3689674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 7061717 - 7061677
Alignment:
Q  17 atactaattttactattgaaatcaattcaattaatcatttc 57  Q
    ||||||||||||| |||||||||||  ||||||||||||||    
T  7061717 atactaattttaccattgaaatcaacacaattaatcatttc 7061677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 36985854 - 36985894
Alignment:
Q  17 atactaattttactattgaaatcaattcaattaatcatttc 57  Q
    ||||||||||||| |||||||||||  ||||||||||||||    
T  36985854 atactaattttaccattgaaatcaacacaattaatcatttc 36985894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 2981918 - 2981827
Alignment:
Q  10 gtagattatactaattttactattgaaatcaattcaattaatcatttctttagaaaccgtgcacaactctaaatcgaatattaaaataagat 101  Q
    |||||||||||||||||| ||||||||||||| | || |||| ||||  ||  |||  ||||||||||||||| ||| ||||||||| ||||    
T  2981918 gtagattatactaatttttctattgaaatcaacttaactaattattttatttaaaaatgtgcacaactctaaaacgactattaaaatgagat 2981827  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 26257984 - 26257946
Alignment:
Q  23 attttactattgaaatcaattcaattaatcatttcttta 61  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  26257984 attttgctattgaaatcaatacaattaatcatttcttta 26257946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 12039151 - 12039208
Alignment:
Q  18 tactaattttactattgaaatcaattcaattaatcatttctttagaaaccgtgcacaa 75  Q
    |||||||||||| |||||||||||  |||||||||||||| |||  || |||||||||    
T  12039151 tactaattttaccattgaaatcaacacaattaatcatttccttaataatcgtgcacaa 12039208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 28749060 - 28749117
Alignment:
Q  18 tactaattttactattgaaatcaattcaattaatcatttctttagaaaccgtgcacaa 75  Q
    |||||||||||| |||||||||||  |||||||||||||| |||  || |||||||||    
T  28749060 tactaattttaccattgaaatcaacacaattaatcatttccttaataatcgtgcacaa 28749117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 39864180 - 39864237
Alignment:
Q  18 tactaattttactattgaaatcaattcaattaatcatttctttagaaaccgtgcacaa 75  Q
    |||||||||||| |||||||||||  |||||||||||||| |||  || |||||||||    
T  39864180 tactaattttaccattgaaatcaacacaattaatcatttccttaataatcgtgcacaa 39864237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 31042865 - 31042905
Alignment:
Q  17 atactaattttactattgaaatcaattcaattaatcatttc 57  Q
    ||||||||||||| |||||||||||  ||||||||||||||    
T  31042865 atactaattttaccattgaaatcaacacaattaatcatttc 31042905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 1225119 - 1225177
Alignment:
Q  21 taattttactattgaaatcaattcaattaatcatttctttagaaaccgtgcacaactct 79  Q
    ||||||||||||| |||||||  |||||||||||||||||| ||  |||||||||||||    
T  1225119 taattttactatttaaatcaacacaattaatcatttctttaaaactcgtgcacaactct 1225177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 21804575 - 21804531
Alignment:
Q  17 atactaattttactattgaaatcaattcaattaatcatttcttta 61  Q
    ||||||||||||| |||||||| ||| ||||||||||||||||||    
T  21804575 atactaattttacaattgaaattaatacaattaatcatttcttta 21804531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 7920310 - 7920381
Alignment:
Q  21 taattttactattgaaatcaattcaattaatcatttctttagaaaccgtgcacaactctaaatcgaatatta 92  Q
    ||||||||| |||||||||||   ||||||||||||||||| ||| ||||||||| ||| || || ||||||    
T  7920310 taattttaccattgaaatcaacaaaattaatcatttctttaaaaatcgtgcacaaatcttaaacggatatta 7920381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 181625 - 181658
Alignment:
Q  18 tactaattttactattgaaatcaattcaattaat 51  Q
    ||||||||||||||||||||||||| ||||||||    
T  181625 tactaattttactattgaaatcaatacaattaat 181658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 16805949 - 16806007
Alignment:
Q  17 atactaattttactattgaaatcaattcaattaatcatttctttagaaaccgtgcacaa 75  Q
    ||||||||||||||||| |||||||  ||||||||||||||||||  || |||||||||    
T  16805949 atactaattttactattaaaatcaacacaattaatcatttctttaataatcgtgcacaa 16806007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 16845230 - 16845288
Alignment:
Q  17 atactaattttactattgaaatcaattcaattaatcatttctttagaaaccgtgcacaa 75  Q
    ||||||||||||||||| |||||||  ||||||||||||||||||  || |||||||||    
T  16845230 atactaattttactattaaaatcaacacaattaatcatttctttaataatcgtgcacaa 16845288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 5789691 - 5789635
Alignment:
Q  19 actaattttactattgaaatcaattcaattaatcatttctttagaaaccgtgcacaa 75  Q
    |||||||||||||||||| ||||| |||||||||||||| |||  || |||||||||    
T  5789691 actaattttactattgaattcaatacaattaatcatttccttaataatcgtgcacaa 5789635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 17695403 - 17695456
Alignment:
Q  22 aattttactattgaaatcaattcaattaatcatttctttagaaaccgtgcacaa 75  Q
    |||||||| |||||||||||| |||||||||||||| |||  || |||||||||    
T  17695403 aattttaccattgaaatcaatacaattaatcatttccttaataatcgtgcacaa 17695456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 12631381 - 12631438
Alignment:
Q  18 tactaattttactattgaaatcaattcaattaatcatttctttagaaaccgtgcacaa 75  Q
    ||||||||||||||||||||||||| |||||||| ||||| |||  || |||||||||    
T  12631381 tactaattttactattgaaatcaatacaattaattatttccttaataatcgtgcacaa 12631438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 34100600 - 34100562
Alignment:
Q  18 tactaattttactattgaaatcaattcaattaatcattt 56  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  34100600 tactaattttactattgaaatcaacacaattaatcattt 34100562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 44180277 - 44180319
Alignment:
Q  14 attatactaattttactattgaaatcaattcaattaatcattt 56  Q
    |||||||||||||||| |||||||||||  |||||||||||||    
T  44180277 attatactaattttaccattgaaatcaacacaattaatcattt 44180319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 7463289 - 7463346
Alignment:
Q  18 tactaattttactattgaaatcaattcaattaatcatttctttagaaaccgtgcacaa 75  Q
    |||||||||||  |||||||||||  |||||||||||||| |||  ||||||||||||    
T  7463289 tactaattttatcattgaaatcaacacaattaatcatttccttaataaccgtgcacaa 7463346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 22738776 - 22738820
Alignment:
Q  17 atactaattttactattgaaatcaattcaattaatcatttcttta 61  Q
    ||||||||||||| ||||||||| |  ||||||||||||||||||    
T  22738776 atactaattttaccattgaaatctacacaattaatcatttcttta 22738820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 34947579 - 34947619
Alignment:
Q  21 taattttactattgaaatcaattcaattaatcatttcttta 61  Q
    ||||||||| |||||||||||  ||||||||||||||||||    
T  34947579 taattttaccattgaaatcaacacaattaatcatttcttta 34947619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 47045507 - 47045468
Alignment:
Q  17 atactaattttactattgaaatcaattcaattaatcatttc 57  Q
    ||||||||||||| ||||||||||| |||||||||||||||    
T  47045507 atactaattttac-attgaaatcaactcaattaatcatttc 47045468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 34064 - 34008
Alignment:
Q  19 actaattttactattgaaatcaattcaattaatcatttctttagaaaccgtgcacaa 75  Q
    |||||||||||||||||| ||||| |||||||||||||| |||  || |||||||||    
T  34064 actaattttactattgaattcaatacaattaatcatttccttaataatcgtgcacaa 34008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 8698379 - 8698435
Alignment:
Q  19 actaattttactattgaaatcaattcaattaatcatttctttagaaaccgtgcacaa 75  Q
    ||||||||||| |||||||||||  ||||||||||||||||||  || |||||||||    
T  8698379 actaattttaccattgaaatcaacacaattaatcatttctttaataatcgtgcacaa 8698435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 8725050 - 8724996
Alignment:
Q  21 taattttactattgaaatcaattcaattaatcatttctttagaaaccgtgcacaa 75  Q
    ||||||||| |||||||||||  ||||||||||||||||||  || |||||||||    
T  8725050 taattttaccattgaaatcaacacaattaatcatttctttaataatcgtgcacaa 8724996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 15439364 - 15439306
Alignment:
Q  17 atactaattttactattgaaatcaattcaattaatcatttctttagaaaccgtgcacaa 75  Q
    ||||||||||||| |||||||| ||| |||||||||||||| ||| | | |||||||||    
T  15439364 atactaattttaccattgaaattaatacaattaatcatttccttaaatatcgtgcacaa 15439306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 37184120 - 37184066
Alignment:
Q  21 taattttactattgaaatcaattcaattaatcatttctttagaaaccgtgcacaa 75  Q
    ||||||||| ||||||||||| |||||||||||||| |||| ||| | |||||||    
T  37184120 taattttaccattgaaatcaactcaattaatcatttttttaaaaatcttgcacaa 37184066  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 30512726 - 30512690
Alignment:
Q  21 taattttactattgaaatcaattcaattaatcatttc 57  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  30512726 taattttaccattgaaatcaatacaattaatcatttc 30512690  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 30553066 - 30553030
Alignment:
Q  21 taattttactattgaaatcaattcaattaatcatttc 57  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  30553066 taattttaccattgaaatcaatacaattaatcatttc 30553030  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 31655125 - 31655165
Alignment:
Q  21 taattttactattgaaatcaattcaattaatcatttcttta 61  Q
    ||||||||| |||||||||||  ||||||||||||||||||    
T  31655125 taattttaccattgaaatcaacacaattaatcatttcttta 31655165  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 30190707 - 30190649
Alignment:
Q  17 atactaattttactattgaaatcaattcaattaatcatttctttagaaaccgtgcacaa 75  Q
    ||||||||||||| |||||||||||  |||||||||||||| ||   ||||||||||||    
T  30190707 atactaattttaccattgaaatcaacacaattaatcatttccttcataaccgtgcacaa 30190649  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 14194624 - 14194681
Alignment:
Q  18 tactaattttactattgaaatcaattcaattaatcatttctttagaaaccgtgcacaa 75  Q
    |||||||||||  |||||||||||  ||||| |||||||||||| ||| |||||||||    
T  14194624 tactaattttatcattgaaatcaacacaattgatcatttctttaaaaatcgtgcacaa 14194681  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 33491125 - 33491072
Alignment:
Q  22 aattttactattgaaatcaattcaattaatcatttctttagaaaccgtgcacaa 75  Q
    ||||||||||||||||||||  |||||||||||||| |||  || |||||||||    
T  33491125 aattttactattgaaatcaacacaattaatcatttccttaataatcgtgcacaa 33491072  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 43253909 - 43253852
Alignment:
Q  18 tactaattttactattgaaatcaattcaattaatcatttctttagaaaccgtgcacaa 75  Q
    |||||||||||| |||||||||||  |||||||||||||| |||  || |||||||||    
T  43253909 tactaattttaccattgaaatcaacacaattaatcatttccttaataatcgtgcacaa 43253852  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 38795402 - 38795470
Alignment:
Q  7 tgggtagattatactaattttactattgaaatcaattcaattaatcatttctttagaaaccgtgcacaa 75  Q
    |||||| || ||||||||||||| |||||||| ||  |||||||||||||| ||| | | |||||||||    
T  38795402 tgggtaaatgatactaattttaccattgaaataaacacaattaatcatttccttaaatatcgtgcacaa 38795470  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 42278737 - 42278773
Alignment:
Q  21 taattttactattgaaatcaattcaattaatcatttc 57  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  42278737 taattttacgattgaaatcaattcaactaatcatttc 42278773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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